RNA id: TU217961



Basic Information


Item Value
RNA id TU217961
length 708
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G192394
representative False

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 81785024 ~ 82314476 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AGGACCAAATTTCATCCCAACTGATTTAAACTGTCAGTGCACCTTTTGTGTATGCTTCTCAAATAAGTACTCCTTTTGTATTATTTTTACCTTACTGTACTGCATTGACATTCATTGTATTAGCCTTTGTATAAACATTAACTGGTGCTATGTTATTTGTTATTGTAATGTGAACGCCAATGTCCTCTATCTGAAGGGAACATGAGATCTGTAGCCAACTGTTTGTGCTGATTCTCTGTAGTTTCTTTTGTTTTAATGTAaaattactgtgtaaaacctccTCCAAAAAAGTATTCATCTGTAGGTCTTTAGGAAAGGAAATTAGGAAAGCTTCCATCTGTACGAACTCAGGTGTATCCAAGGACTATTCACAGTCCTGAGACCTGTTTTAGGAGCTCCTCCCATGCACTGATACtaccacacacaaaacacacactcagtcCTCCGTCTGTCCTCCAACTGTTTAATTATGAATATTATTTACTAGCACAAAAAAGGTGCTTTATCTTGTTTATATGTATCTTATATAGTATGTTGTTGTAGGTAGATGATTTCCTGGTGCAATGCTCAATGTTAAagttttattttaataatgtgcaACAGAATCAAAGTGGGAGAGTAAGAGAGAAAAGAAATGGAAATACAATGCCTCTTGTATTGTAAAGTGGTTCACTTAGTGCCTCTTTTAAAGTGGTTATTAAAAATCTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU218310 lncRNA upstream 64146 82248565 ~ 82249623 (+) True G192716
TU218285 lncRNA upstream 95388 82218091 ~ 82218381 (+) True G192693
TU218279 lncRNA upstream 106146 82205790 ~ 82207623 (+) True G192687
TU218242 lncRNA upstream 168869 82144316 ~ 82144900 (+) True G192654
TU218109 lncRNA upstream 324742 81987898 ~ 81989027 (+) True G192526
TU218722 lncRNA downstream 11541 82326017 ~ 82326245 (+) True G193121
TU218737 lncRNA downstream 24166 82338642 ~ 82338842 (+) True G193135
TU218738 lncRNA downstream 24845 82339321 ~ 82344683 (+) False G193136
TU218741 lncRNA downstream 24845 82339321 ~ 82353335 (+) False G193136
TU218740 lncRNA downstream 33120 82347596 ~ 82349401 (+) True G193136
XM_036956506.1 mRNA upstream 541331 81702783 ~ 81772438 (+) False LOC110497605
XM_021573943.2 mRNA downstream 51707 82366183 ~ 82392379 (+) False LOC110497665
XM_021573934.2 mRNA downstream 51708 82366184 ~ 82393779 (+) False LOC110497665
LOC110497686 mRNA downstream 103318 82417794 ~ 82426875 (+) False LOC110497686
XM_036956613.1 mRNA downstream 293279 82607755 ~ 82644833 (+) False LOC110497700
XM_036956620.1 mRNA downstream 293279 82607755 ~ 82644833 (+) True LOC110497700
TU216654 other upstream 1227589 81083828 ~ 81086180 (+) False LOC110497320
TU216655 other upstream 1227589 81083828 ~ 81086180 (+) True LOC110497320
TU216621 other upstream 1242894 81068620 ~ 81070875 (+) True LOC110497314
TU216622 other upstream 1245205 81065554 ~ 81068564 (+) False LOC110497314
TU216443 other upstream 1547055 80765732 ~ 80766714 (+) True G191057
TU218731 other downstream 51809 82366285 ~ 82388521 (+) True LOC110497665
TU218778 other downstream 86637 82401113 ~ 82403835 (+) True G193170
TU218791 other downstream 103770 82418246 ~ 82422182 (+) True LOC110497686
TU218970 other downstream 338157 82652633 ~ 82654430 (+) True G193339
TU219583 other downstream 804851 83119327 ~ 83124965 (+) True LOC110497837

Expression Profile