RNA id: TU218310



Basic Information


Item Value
RNA id TU218310
length 897
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G192716
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 82248565 ~ 82249623 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATAAGAACCTTAATAGGTGCATCAAGACTGGAACCAACAGGAGCCtgagcagcttctacccccaagccataagactgttaaatagttagtgcagatagtccaggtagctatttggttatcTGACCCCCATTTGCacaaactcttttgactcatcacatacgctgcatttcactgttagtctcaccggttgtttacaaagcatgtgacaaagacCATTTGATTTGGATATGAGGTACAGTGCCGTGATATGAggtacgaagcatgtgacaaagacCATTTGATTTGGATATGAGGTACAGTGCCGTGATATGAGGTACAGTGCCGTGATATGAggtacgaagcatgtgacaaagacCATTTGATTTGGATATGAGgtacagtgccgtgaaaaagtatttgccccatTTCCGATTTTCTCTATATTTGCTTATTATTgacactgaatgttatcagatcttcaaccataCCTGATATTAGATATATAAAACCTGAGGGAACTAATAACACAACAAATGTATACttaatatgtttttatatatataaacaaagttatgcaacaacTTTTCCctatgtgaaaaagtaattgccccctaacATTGAATAATCGGTTGTGCCAACTTTAGCTGCAATAACttcaaccaaacacttcctgtagttgttgatcagtctctcacaccactgtggaggaattttgtcccactcttccatgaagaactgctttaactcagcaacaTTTGTAGGCTTTCGAGTATGAAATGCTTGTTTGAGGTCCTAACACAACATCTCAATCgggtttaggtctggactttgactaggccattacaAAGCTATTCAGCCATTCTGATGTAGACTTGTTTGTGTGTTTTGAATCACTGTCTTGCTGCATGACACAACTGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU218285 lncRNA upstream 30184 82218091 ~ 82218381 (+) True G192693
TU218279 lncRNA upstream 40942 82205790 ~ 82207623 (+) True G192687
TU218242 lncRNA upstream 103665 82144316 ~ 82144900 (+) True G192654
TU218109 lncRNA upstream 259538 81987898 ~ 81989027 (+) True G192526
TU218098 lncRNA upstream 272834 81974730 ~ 81975731 (+) True G192515
TU217961 lncRNA downstream 64146 82313769 ~ 82314476 (+) False G192394
TU217963 lncRNA downstream 64146 82313769 ~ 82314325 (+) False G192394
TU217967 lncRNA downstream 64146 82313769 ~ 82314395 (+) True G192394
TU218722 lncRNA downstream 76394 82326017 ~ 82326245 (+) True G193121
TU218737 lncRNA downstream 89019 82338642 ~ 82338842 (+) True G193135
XM_036956506.1 mRNA upstream 476127 81702783 ~ 81772438 (+) False LOC110497605
XM_021573943.2 mRNA downstream 116560 82366183 ~ 82392379 (+) False LOC110497665
XM_021573934.2 mRNA downstream 116561 82366184 ~ 82393779 (+) False LOC110497665
LOC110497686 mRNA downstream 168171 82417794 ~ 82426875 (+) False LOC110497686
XM_036956613.1 mRNA downstream 358132 82607755 ~ 82644833 (+) False LOC110497700
XM_036956620.1 mRNA downstream 358132 82607755 ~ 82644833 (+) True LOC110497700
TU216654 other upstream 1162385 81083828 ~ 81086180 (+) False LOC110497320
TU216655 other upstream 1162385 81083828 ~ 81086180 (+) True LOC110497320
TU216621 other upstream 1177690 81068620 ~ 81070875 (+) True LOC110497314
TU216622 other upstream 1180001 81065554 ~ 81068564 (+) False LOC110497314
TU216443 other upstream 1481851 80765732 ~ 80766714 (+) True G191057
TU218731 other downstream 116662 82366285 ~ 82388521 (+) True LOC110497665
TU218778 other downstream 151490 82401113 ~ 82403835 (+) True G193170
TU218791 other downstream 168623 82418246 ~ 82422182 (+) True LOC110497686
TU218970 other downstream 403010 82652633 ~ 82654430 (+) True G193339
TU219583 other downstream 869704 83119327 ~ 83124965 (+) True LOC110497837

Expression Profile