RNA id: TU218722



Basic Information


Item Value
RNA id TU218722
length 229
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G193121
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 82326017 ~ 82326245 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtgtgtgtgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgtgtgtgtgtgtgtaccagaccTGATTTCAAATCAGTGTTTAATCTAGAAATACCTTTCATATAAACTAAttgcctttcacaatgcaatgctcacaaTTATTTTCATATGATTCTCTTCGCAtttgtttaaatacatttgaccatCACTTAATCCAACTGGGTTTAATGGTTAATCACTTAAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU217961 lncRNA upstream 11541 82313769 ~ 82314476 (+) False G192394
TU217967 lncRNA upstream 11622 82313769 ~ 82314395 (+) True G192394
TU217963 lncRNA upstream 11692 82313769 ~ 82314325 (+) False G192394
TU218310 lncRNA upstream 76394 82248565 ~ 82249623 (+) True G192716
TU218285 lncRNA upstream 107636 82218091 ~ 82218381 (+) True G192693
TU218737 lncRNA downstream 12397 82338642 ~ 82338842 (+) True G193135
TU218738 lncRNA downstream 13076 82339321 ~ 82344683 (+) False G193136
TU218741 lncRNA downstream 13076 82339321 ~ 82353335 (+) False G193136
TU218740 lncRNA downstream 21351 82347596 ~ 82349401 (+) True G193136
TU218729 lncRNA downstream 56449 82382694 ~ 82397198 (+) True G193127
XM_036956506.1 mRNA upstream 553579 81702783 ~ 81772438 (+) False LOC110497605
XM_021573943.2 mRNA downstream 39938 82366183 ~ 82392379 (+) False LOC110497665
XM_021573934.2 mRNA downstream 39939 82366184 ~ 82393779 (+) False LOC110497665
LOC110497686 mRNA downstream 91549 82417794 ~ 82426875 (+) False LOC110497686
XM_036956613.1 mRNA downstream 281510 82607755 ~ 82644833 (+) False LOC110497700
XM_036956620.1 mRNA downstream 281510 82607755 ~ 82644833 (+) True LOC110497700
TU216654 other upstream 1239837 81083828 ~ 81086180 (+) False LOC110497320
TU216655 other upstream 1239837 81083828 ~ 81086180 (+) True LOC110497320
TU216621 other upstream 1255142 81068620 ~ 81070875 (+) True LOC110497314
TU216622 other upstream 1257453 81065554 ~ 81068564 (+) False LOC110497314
TU216443 other upstream 1559303 80765732 ~ 80766714 (+) True G191057
TU218731 other downstream 40040 82366285 ~ 82388521 (+) True LOC110497665
TU218778 other downstream 74868 82401113 ~ 82403835 (+) True G193170
TU218791 other downstream 92001 82418246 ~ 82422182 (+) True LOC110497686
TU218970 other downstream 326388 82652633 ~ 82654430 (+) True G193339
TU219583 other downstream 793082 83119327 ~ 83124965 (+) True LOC110497837

Expression Profile