RNA id: TU218809


Basic Information

Item Value
RNA id TU218809
length 2956
lncRNA type antisense_over
GC content 0.42
exon number 3
gene id G193190
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 82429358 ~ 82432564 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTCATCTTATCATAGATTTATTACAATATAGCATCTGATCAACATAAAACACACTATCTGTTGACAGAAAAGTGTCAAAGGGCATTCCCCTCTGAAGTGCACACATACTCTCATACTGTCATGTGATTGTGGAAGATAAAAACTTTTACAGACATACACATTTTATACACAGATATTAAATTGAATTCCATGTGACTGAGTTACAAGAGTTAAAAACGACAACAGAAAATCACTTGACCAATTGGCAACAAATTTGGTATATAGCAACTATGAACGTCTTTAAACACAATATTTTCCAAGACTCTAGCTCAAACAACATGGCCACTATAAGCCAATGAGCTTGCATGATTGTTTTTACAGGAAACCTAACCATACTCTACAAGTTAGCTACACCCAGATCCCTGAGCGTGTGCCAAATTTCATCACTGAGTCAAACAGATCAAGAGGTATAATCAAGTGCCCCTGACAGTGCCACTTTGTGGTTGATCTAAATGTGCTTGCATATGTTGAGTTTTGACAGTGTTTGGAACATGTGTATGAAGTTGGTACAATACACATATCTGTGTCTGATTGATATGCATTTATGTGCCAGGTCACACCCACTTAAATGTTTATTGGTCAGTAGCTGCCATGTTGTTTGAGTTGCTATCCTGGAAAATATTGCTTTGAGAGAACTTGGTACATAGATACCATGTATCACGTTTCATGCAGATCGGTCATTCGATGCCAGATGAGTAGCGTTTTAAATGTTTATCAAAGAATTGGAAATGGTGGAAAATCCATCATGGAAAACCTTATGCGTCATTGAAGCAAATGTGTTCCTTGTGAGGAGAGGCACCTATGTACCACATTTCATGACTCTAGCTCAAACGGGGTAAGGGACATGACCTTTCAAAGTTTGCATCTTCAATCGCTTGTTATAACGCCACCATGAGGCCAATTGACATGGCATTGCTTGAGAGGGTGTGGGGCCCATGGGCCTTTACCATCACACCAAATTACACCTTCTTAGGCCTTACAGGAATGTGCGTATTCATTTTCCTTGGCGGAAGAAGATGTATAATAATGAACGGCAACAAATACAATAGGGCTTCTCACAGCTTCACTGCTTGAACCCCTAACGAACCATAGAGAATGACCATTACAGTATGAGATGAGTTGATGCCTATGTCCCAAATAGCAATCTATTCTCCATCTATtgccctacctttgaccagggcccagaagCACCTACTTgagccctctgggtcctggtcaaaagtaaggcactacataggaaacagggtgccaCACCACAATTACAGTATGATCAAACATCTCTATCAACATGAGTGAGTTACTAAGACTATCTACTGTATTGGACACAAGCACATGATTTTCAAATCAGTCCTCCTGACTACATTCTGTACCAATATAGGATTTAAGACTCAAGGCATTTCAAGTAAATTCCGTACAGATAATCAGATCATCGTCACATACATTTTCTTTTCATTCGGTTATTTATAGACTATGTACAATATGAAAAGAAAGTCATAATGCTGTTCAGGGATTGTATTATCACGGAGGACACTTCtctgagagaaaaggagacaacACTTTACCTGAACTCGTCGTAAACATGCCGTGAAGCTTCATAGCATAAGGCTAAATACCAcaatacatgtaaatatatgtGTCATAACATTGGCATAGTATATCCTGGAGACCTGACATATGCTATGAAGCTTtatgacatgttaataaaacTGGTATGAAGCATTATGGCAGCGAGTTCAAGTAAAGTGTAAAACAAAAGGCAAAGTAACGTCGTATGCAAATCCGTTTCTCCAGTTAACATTTTTTAAAAGTGCAGGATATTGAGAACATTGACTATCACAGTCATAATGATTGAGATGACAAAGCAATGTTACCCCCCAAGGCAGCCAGGCGGTAAGGTGATCAATGTTACCCCCCAAGGCAGCCAGGCGGTAAGGTGATCAATGTTACCCCCCAAGGCAGCCAGGCGGTAAGTTGATCAATGTTACCCCCCAAGGCAGCCAGGCGGTAAAGTGATCAATGTTCCATTTCTAATTccaatgtataaaaaatgtaatactcCAGTTACGTTCACAAGTTAACAGGTCATATTAAAACATATCTAAAGAGAATAACCTGGTCCCACATCTGTTTGTGTGCTATTGCCAACTCCTATTATCATTGttgtaggagttggcaagaccacacaaacagatctgagaccaggctaggaAGAAAATACTTAACCTTAAAGTTACACGTACACCCTTTCCAAAGAGGGCCTATCAGTAATACAAGGAGCAGCCCCTTTCAAGTCCAAAGAGAACTGAACAACACCAACCAACCCAATGTACCTGACCTGCGTATAGCCCAGTCTGTCTTCATCTTAGTCTCAGACACAGTACACTGAGAATACAGAAGGTAGAGCGTGGCTGCCCACAGGACCACTGTACTTTAACCTTTAACCCTTTCCCTTGACCTCCAGTCTGCAGGAGACTGCAATAGTGACACTGGCCAATGTGTGGCATGCCTGGCATCTCAGTCAGAGGCTCACTCATAGAGCAGCAAAACTGACATGGGATGATCAGAATGACTAGGCAGCTTGTGTTGTCATAAAGGCAGACATCACTGTACTGTTCTATGTGAGAGGGTGATGCTGGGTGAGGAGTCAGTACACTGTCTAAGAACAAGGCACTGTTTGCTTTGAATACAAAGCACTGTTTGAGTAAATTATGCTTGTAGGCCAGTGGCTGCTGGCCCCATAAATCGGATACTattgtgtgggtgcgtgtgtgtactgtatgcacATTGTGTGTGTGGCCCCTTTGTGTACCTCCAGCAGTTCTCTGTTAGCAGGGGGACCCAGGCCCCTCAGTGTGCTGGGATGTGGTGGTTGTTGACCCCAGCAGGCCCCAGGAAGCCCATCATCTGTTTATTCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218729 lncRNA upstream 32160 82382694 ~ 82397198 (+) True G193127
TU218741 lncRNA upstream 76023 82339321 ~ 82353335 (+) False G193136
TU218740 lncRNA upstream 79957 82347596 ~ 82349401 (+) True G193136
TU218738 lncRNA upstream 84675 82339321 ~ 82344683 (+) False G193136
TU218737 lncRNA upstream 90516 82338642 ~ 82338842 (+) True G193135
TU218823 lncRNA downstream 20630 82453194 ~ 82454078 (+) True G193204
TU218874 lncRNA downstream 98553 82531117 ~ 82617477 (+) True G193245
TU218889 lncRNA downstream 114790 82547354 ~ 82547892 (+) True G193260
TU218911 lncRNA downstream 212774 82645338 ~ 82679334 (+) True G193281
TU219031 lncRNA downstream 298494 82731058 ~ 82732472 (+) False G193390
LOC110497686 mRNA upstream 2483 82417794 ~ 82426875 (+) False LOC110497686
XM_021573934.2 mRNA upstream 35579 82366184 ~ 82393779 (+) False LOC110497665
XM_021573943.2 mRNA upstream 36979 82366183 ~ 82392379 (+) False LOC110497665
XM_036956501.1 mRNA upstream 656920 81702853 ~ 81772438 (+) False LOC110497605
XM_036956613.1 mRNA downstream 175191 82607755 ~ 82644833 (+) False LOC110497700
XM_036956620.1 mRNA downstream 175191 82607755 ~ 82644833 (+) True LOC110497700
XM_021574038.2 mRNA downstream 307034 82739598 ~ 82755517 (+) False LOC110497717
XM_036956673.1 mRNA downstream 308307 82740871 ~ 82755517 (+) False LOC110497717
XM_021574029.2 mRNA downstream 317670 82750234 ~ 82755517 (+) True LOC110497717
TU218791 other upstream 7176 82418246 ~ 82422182 (+) True LOC110497686
TU218778 other upstream 25523 82401113 ~ 82403835 (+) True G193170
TU218731 other upstream 40837 82366285 ~ 82388521 (+) True LOC110497665
TU216654 other upstream 1343178 81083828 ~ 81086180 (+) False LOC110497320
TU218970 other downstream 220069 82652633 ~ 82654430 (+) True G193339
TU219583 other downstream 686763 83119327 ~ 83124965 (+) True LOC110497837
TU220190 other downstream 1126356 83558920 ~ 83559598 (+) True G194395
TU220995 other downstream 2163846 84596410 ~ 84600324 (+) True G195155
TU222039 other downstream 2577900 85010464 ~ 85020034 (+) True LOC110498034

Expression Profile