RNA id: TU218874



Basic Information


Item Value
RNA id TU218874
length 283
lncRNA type read_through
GC content 0.56
exon number 2
gene id G193245
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 82531117 ~ 82617477 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


agtgtgtgtggcctccacgtgcctgtatgacctccctacaacgcctgggcatgctcctgatgaggtggcggatggtctcctgagggatctcctcccagacctggactaaagcatccgccaactcctggacagttggtggatggagcgagacatgatgtcccagatgtgctcaattggattcaggtctggggaacgggcgggccagtccataacatcaatgccttcctcttgcaggaactgctgacacactccagccacatgaggtctagcattgtcttgcatt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU218823 lncRNA upstream 77039 82453194 ~ 82454078 (+) True G193204
TU218802 lncRNA upstream 98553 82429358 ~ 82432564 (+) False G193190
TU218911 lncRNA downstream 27861 82645338 ~ 82679334 (+) True G193281
TU219031 lncRNA downstream 113581 82731058 ~ 82732472 (+) False G193390
TU219032 lncRNA downstream 113581 82731058 ~ 82733350 (+) True G193390
TU219030 lncRNA downstream 117839 82735316 ~ 82740567 (+) True G193389
TU219036 lncRNA downstream 123733 82741210 ~ 82741473 (+) True G193394
LOC110497686 mRNA upstream 104242 82417794 ~ 82426875 (+) False LOC110497686
XM_021573934.2 mRNA upstream 137338 82366184 ~ 82393779 (+) False LOC110497665
XM_021573943.2 mRNA upstream 138738 82366183 ~ 82392379 (+) False LOC110497665
XM_036956501.1 mRNA upstream 758679 81702853 ~ 81772438 (+) False LOC110497605
XM_021574038.2 mRNA downstream 122121 82739598 ~ 82755517 (+) False LOC110497717
XM_036956673.1 mRNA downstream 123394 82740871 ~ 82755517 (+) False LOC110497717
XM_021574029.2 mRNA downstream 132757 82750234 ~ 82755517 (+) True LOC110497717
XR_002469701.2 mRNA downstream 188063 82805540 ~ 82826758 (+) False LOC110497777
XM_021574156.2 mRNA downstream 238440 82855917 ~ 82889873 (+) False arntl2
TU218791 other upstream 108935 82418246 ~ 82422182 (+) True LOC110497686
TU218778 other upstream 127282 82401113 ~ 82403835 (+) True G193170
TU218731 other upstream 142596 82366285 ~ 82388521 (+) True LOC110497665
TU216654 other upstream 1444937 81083828 ~ 81086180 (+) False LOC110497320
TU218970 other downstream 35156 82652633 ~ 82654430 (+) True G193339
TU219583 other downstream 501850 83119327 ~ 83124965 (+) True LOC110497837
TU220190 other downstream 941443 83558920 ~ 83559598 (+) True G194395
TU220995 other downstream 1978933 84596410 ~ 84600324 (+) True G195155
TU222039 other downstream 2392987 85010464 ~ 85020034 (+) True LOC110498034

Expression Profile