RNA id: TU218970



Basic Information


Item Value
RNA id TU218970
length 1099
RNA type TUCP
GC content 0.53
exon number 2
gene id G193339
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 82652633 ~ 82654430 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cttctcactcctctccccgAGTGCCTTCAGCTCAGAACCCAGTCTGGTTGTGTCCTTCTCTAGGGCAGCCTTAGTCTGGTTCAGCTCCTTCACTCTGCGCCTCTCCTTCTGCAGCTCCTCCTGGGTCACACCctgtgtgggggaggggagggggtttcAGCATGAGGAGAACAACCATACAACTCACACCCTAAGTCCCATTAGGGAAGGAGACCAGGTCTGATATGGATCAAAGTCCCCAAATATCATGACACTCTGACTATGGGTTGGAACAAGATTTACAACAACTATAACAAGAGATTCATTAGACAAATCCAATCGGGACACCCCCCAGTCAGACATACAGTCAGAGTCTTCGCTCCTGGCTCTTATCAAGGAttagtttagccttttagatcataatgaacccGATTATCTGGACAGGAAACTCAGATGCTGTTTGAACACGATCCTGGGTCTGACCTGATTTTTCTGCAGCTCTTTGAGGGCTGTCTCCTGCTGGCCCAGCCTCTGGTCCCGTTTGGCAAGCTCCTGGTTCAGGGAGGTCCGGGCAGCCTCCACTTCCTGGACCTGTCCCTCCAGACCAGTCAGCTGGGTCCGGTTAGCAGCCAACTCCTCCTGGGACAGGGTCAGCCTCTCCTCAGACGCCGCAAGGTCCTGTCTGAGAGATGACACCTCTGACTCCTTGCCGTAGTAGTCAGACTGCATCTTGGCCAGACCCTCCTGACTCCGCTCTAGGGCCTTCTGCAGCTCAGTTGTTCTGGTCCTCTCAAAACTCAGCTCCTGGCCCAGGCCTGACACCTGCTCCTTCAGACGACCCTCCTCCTCAGCCTGGAATACACACATTTAGTCCAAAACATGGAATTAAAGCATGgaattgtttgtgtgtatgtgtgtgtcttcttACCTTCCTGGCATGTGCTCCTTGCAGCTCGCTCACTTGGCTCTCCAGTTTCTTATTTTCCTGGTTGAAGGACCCCTGGGCTGTCTTCAGCTGTGTCTGCAGCTGCTGcacccccttctctttctctttcagggCCTCCTGGGTCTCAGTGTGCTGCTCTGTTAATATAGTCAGCTGCATCTTCAACCCTTTCTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU218874 lncRNA upstream 35156 82531117 ~ 82617477 (+) True G193245
TU218889 lncRNA upstream 104741 82547354 ~ 82547892 (+) True G193260
TU218823 lncRNA upstream 198555 82453194 ~ 82454078 (+) True G193204
TU218802 lncRNA upstream 220069 82429358 ~ 82432564 (+) False G193190
TU218803 lncRNA upstream 220069 82429358 ~ 82432564 (+) False G193190
TU219031 lncRNA downstream 76628 82731058 ~ 82732472 (+) False G193390
TU219032 lncRNA downstream 76628 82731058 ~ 82733350 (+) True G193390
TU219030 lncRNA downstream 80886 82735316 ~ 82740567 (+) True G193389
TU219036 lncRNA downstream 86780 82741210 ~ 82741473 (+) True G193394
TU219034 lncRNA downstream 102004 82756434 ~ 82756779 (+) True G193392
XM_036956613.1 mRNA upstream 7800 82607755 ~ 82644833 (+) False LOC110497700
XM_036956620.1 mRNA upstream 7800 82607755 ~ 82644833 (+) True LOC110497700
LOC110497686 mRNA upstream 225758 82417794 ~ 82426875 (+) False LOC110497686
XM_021573934.2 mRNA upstream 258854 82366184 ~ 82393779 (+) False LOC110497665
XM_021573943.2 mRNA upstream 260254 82366183 ~ 82392379 (+) False LOC110497665
XM_021574038.2 mRNA downstream 85168 82739598 ~ 82755517 (+) False LOC110497717
XM_036956673.1 mRNA downstream 86441 82740871 ~ 82755517 (+) False LOC110497717
XM_021574029.2 mRNA downstream 95804 82750234 ~ 82755517 (+) True LOC110497717
XR_002469701.2 mRNA downstream 151110 82805540 ~ 82826758 (+) False LOC110497777
XM_021574156.2 mRNA downstream 201487 82855917 ~ 82889873 (+) False arntl2
TU218791 other upstream 230451 82418246 ~ 82422182 (+) True LOC110497686
TU218778 other upstream 248798 82401113 ~ 82403835 (+) True G193170
TU218731 other upstream 264112 82366285 ~ 82388521 (+) True LOC110497665
TU216654 other upstream 1566453 81083828 ~ 81086180 (+) False LOC110497320
TU216655 other upstream 1566453 81083828 ~ 81086180 (+) True LOC110497320
TU219583 other downstream 464897 83119327 ~ 83124965 (+) True LOC110497837
TU220190 other downstream 904490 83558920 ~ 83559598 (+) True G194395
TU220995 other downstream 1941980 84596410 ~ 84600324 (+) True G195155
TU222039 other downstream 2356034 85010464 ~ 85020034 (+) True LOC110498034
TU223067 other downstream 3481186 86135616 ~ 86136608 (+) True G197069

Expression Profile