RNA id: TU219031


Basic Information

Item Value
RNA id TU219031
length 1371
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id G193390
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 82731058 ~ 82733350 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGCAGGTGGACTGTTTTCCTACCATTTGGAGAACAGGAAAACGTGCCCCCCCACGACCCCTCCAGTTCAATAGAAATAATGAATTTACAAACAGTGAATTGAATACAGACTTTTCAAACCAAATACCAATATTGACAGTTGAGACAAAAGCCTTCATTGATCTCTTGTAGTTAGTTCCTGCAATTCCCCCATTACCCCTAACCACCTACCCTTAACTCCCCCCAACCTCCTCGAACAAAATtacccctaacacacacacacacactgcagaactTACAACTCATTACACTTTTCGGAAATTAATGCCATGGGAAGGAAGTAAACCGTTGCGTCTTGTTGCATTAGATTGTGACAAACAGGAAGAACAAGAAGCTAAAAGAGCCATGTAGCCCGATGTCAGGAAAACATCCATATCAAATAAAAAGGAGAGACGAGAAAAACAATATATTCCTAATACAGAAGTTATGGAATTCCTGTCCCGCCACCACTATCCCACTCCATACTGCCCTCCCTCCACCACAAGACTACCTTAGGGTCTCTACACGGACAGCGGTTGCAACAGTTAAACGTGATGGTGGCAGGCTCAGATTCATTGTTTAGTCGTTATATCATTACTTTGTATTTCAGGTTAAAGTGGTTTAGCAGGCGCTATGTTGATTTTGTTGTGGCCTTCAACAGGGTAATGAGTCCAACAATAGCCTGTCTCAAAGGGTGTCTCTACTACATGGGGCTAATCAGCGGATTTCATTAAACAACCAGCATCACAAGAGAAAACAAAGTTAAAAGAAAAGTTTTTTAAAAGTTTGGCCATCTTGGACAACAACCCAGACTGTCTCCCTCCAACCCACCACCTCCGAATAAAACATGGGACAGACAAACACTTTGTTTTTGACATTTTCTGTACGAAGCTAGTTAAAAGCAGAGGTTGGCAGTTTCCTCCCAAATCAATGGAAAATAAAGCCAGGTGGTGAGTTAGATCTCAACCCTGGCTGCCCATGCATCTGAAcagtagtgagttaggacaaAGACGACAAGTTACGTTTTTTTCTCGTATGTGCATTTAAAATCACCAATTTACTTGTCTTTTTCCTCTTTTTTAATATATTCCTTAAATGTTTACTTTATTATAATAATACCTTTTTTTCCCTCCAAGACGGTGTCCTTTAAATGCAAATGAAGTAGGAAGAAGAGGTCTTGGCAGAAATAAGGAGTGTGTTCTCACACTGACTTCCCGCTCAGTTTCTTTCCACTTGTTTTACGTTTTCTACACTTCTATGTTGTTTTGAGCGTAAAGCCTGGTCCATGTCCGGGCTGCAACACAAAATAAGGAAGAGAGATGAGGTCAGAAAGCAAGACTAGGTCCATTATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218911 lncRNA upstream 51724 82645338 ~ 82679334 (+) True G193281
TU218874 lncRNA upstream 113581 82531117 ~ 82617477 (+) True G193245
TU218889 lncRNA upstream 183166 82547354 ~ 82547892 (+) True G193260
TU218823 lncRNA upstream 276980 82453194 ~ 82454078 (+) True G193204
TU218805 lncRNA upstream 298494 82429358 ~ 82432564 (+) False G193190
TU219030 lncRNA downstream 2844 82735316 ~ 82740567 (+) True G193389
TU219036 lncRNA downstream 8738 82741210 ~ 82741473 (+) True G193394
TU219034 lncRNA downstream 23962 82756434 ~ 82756779 (+) True G193392
TU219035 lncRNA downstream 38743 82771215 ~ 82778495 (+) True G193393
TU219063 lncRNA downstream 68794 82801266 ~ 82801558 (+) True G193415
XM_036956613.1 mRNA upstream 86225 82607755 ~ 82644833 (+) False LOC110497700
XM_036956620.1 mRNA upstream 86225 82607755 ~ 82644833 (+) True LOC110497700
LOC110497686 mRNA upstream 304183 82417794 ~ 82426875 (+) False LOC110497686
XM_021573934.2 mRNA upstream 337279 82366184 ~ 82393779 (+) False LOC110497665
XM_021573943.2 mRNA upstream 338679 82366183 ~ 82392379 (+) False LOC110497665
XM_021574038.2 mRNA downstream 7126 82739598 ~ 82755517 (+) False LOC110497717
XM_036956673.1 mRNA downstream 8399 82740871 ~ 82755517 (+) False LOC110497717
XM_021574029.2 mRNA downstream 17762 82750234 ~ 82755517 (+) True LOC110497717
XR_002469701.2 mRNA downstream 73068 82805540 ~ 82826758 (+) False LOC110497777
XM_021574156.2 mRNA downstream 123445 82855917 ~ 82889873 (+) False arntl2
TU218970 other upstream 76628 82652633 ~ 82654430 (+) True G193339
TU218791 other upstream 308876 82418246 ~ 82422182 (+) True LOC110497686
TU218778 other upstream 327223 82401113 ~ 82403835 (+) True G193170
TU218731 other upstream 342537 82366285 ~ 82388521 (+) True LOC110497665
TU216654 other upstream 1644878 81083828 ~ 81086180 (+) False LOC110497320
TU219583 other downstream 386855 83119327 ~ 83124965 (+) True LOC110497837
TU220190 other downstream 826448 83558920 ~ 83559598 (+) True G194395
TU220995 other downstream 1863938 84596410 ~ 84600324 (+) True G195155
TU222039 other downstream 2277992 85010464 ~ 85020034 (+) True LOC110498034
TU223067 other downstream 3403144 86135616 ~ 86136608 (+) True G197069

Expression Profile