RNA id: TU219562



Basic Information


Item Value
RNA id TU219562
length 205
lncRNA type antisense_over
GC content 0.50
exon number 2
gene id G193857
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 83092076 ~ 83092412 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AGTGTCTCACCCATGGCCTGCTTGCCCATAGCACACTGGTATGTGTTCCTGGGGGACTGATTGTGATGGGGGTAGGGGATCAGACCAGCACAGACCCCTAGTAGTGTGAAGGGCTCAATCTCCAAGTGTGTAGTATCCTTATTAATCATGTGCTCATAGAGGGCGATCTGACAGTCATTCTCCTCGTTCACGTCCAGGTACTCCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU219176 lncRNA upstream 69982 83021796 ~ 83022094 (+) True G193513
TU219134 lncRNA upstream 137019 82954831 ~ 82955057 (+) True G193474
TU219050 lncRNA upstream 265314 82805777 ~ 82826762 (+) False LOC110497777
TU219053 lncRNA upstream 265797 82805777 ~ 82826279 (+) True LOC110497777
TU219051 lncRNA upstream 266100 82805777 ~ 82825976 (+) False LOC110497777
TU219560 lncRNA downstream 4152 83096564 ~ 83099389 (+) True G193855
TU219558 lncRNA downstream 12520 83104932 ~ 83105834 (+) True G193853
TU219587 lncRNA downstream 35711 83128123 ~ 83128591 (+) True G193880
TU219593 lncRNA downstream 39861 83132273 ~ 83132488 (+) True G193886
TU219612 lncRNA downstream 61848 83154260 ~ 83154472 (+) True G193905
XM_021574195.2 mRNA upstream 89207 82978247 ~ 83002869 (+) True si:dkey-103i16.6
XM_021574182.2 mRNA upstream 118301 82964528 ~ 82973775 (+) True LOC110497803
XM_036956797.1 mRNA upstream 137965 82893770 ~ 82954111 (+) False ppfibp1b
XM_021574253.2 mRNA downstream 23676 83116088 ~ 83118600 (+) True LOC110497829
XM_021574264.2 mRNA downstream 26809 83119221 ~ 83123796 (+) False LOC110497837
XM_036934286.1 mRNA downstream 110950 83203362 ~ 83204801 (+) True LOC110502176
XM_021574284.2 mRNA downstream 121817 83214229 ~ 83216248 (+) True LOC110497849
XM_036957002.1 mRNA downstream 148857 83241269 ~ 83344652 (+) False LOC110497874
TU218970 other upstream 437646 82652633 ~ 82654430 (+) True G193339
TU218791 other upstream 669894 82418246 ~ 82422182 (+) True LOC110497686
TU218778 other upstream 688241 82401113 ~ 82403835 (+) True G193170
TU218731 other upstream 703555 82366285 ~ 82388521 (+) True LOC110497665
TU216655 other upstream 2005896 81083828 ~ 81086180 (+) True LOC110497320
TU219583 other downstream 26915 83119327 ~ 83124965 (+) True LOC110497837
TU220190 other downstream 466508 83558920 ~ 83559598 (+) True G194395
TU220995 other downstream 1503998 84596410 ~ 84600324 (+) True G195155
TU222039 other downstream 1918052 85010464 ~ 85020034 (+) True LOC110498034
TU223067 other downstream 3043204 86135616 ~ 86136608 (+) True G197069

Expression Profile