RNA id: TU219829


Basic Information

Item Value
RNA id TU219829
length 262
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G194088
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 83137925 ~ 83138186 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

catttacaactgtgacctggccaagataaagcaaagcagttagacacatacaatgacacagagttacacatggagtaaaacaaacatacagtcaataacacattagaaacaagtctatatacgatgtgagcaaatgaggtgagataatggtaaaggcaaaaaaaggccatgggggcaaagtaaatacaatatagcaagtaaaacactggaatggtagatttgcagtggaagaatgtgcaaagtagaaataaaaataatgggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219820 lncRNA downstream 9701 83127992 ~ 83128224 (-) True G194079
TU219815 lncRNA downstream 12851 83121883 ~ 83125074 (-) True G194078
TU219811 lncRNA downstream 12959 83121883 ~ 83124966 (-) False G194078
TU219810 lncRNA downstream 13037 83121883 ~ 83124888 (-) False G194078
TU219806 lncRNA downstream 18962 83118390 ~ 83118963 (-) True G194075
TU219783 lncRNA upstream 17517 83155703 ~ 83156661 (-) True LOC110497842
TU219853 lncRNA upstream 33628 83171814 ~ 83172349 (-) True G194112
TU219860 lncRNA upstream 48308 83186494 ~ 83186877 (-) True G194119
TU219983 lncRNA upstream 215678 83353864 ~ 83358812 (-) True G194225
TU219984 lncRNA upstream 221707 83359893 ~ 83360101 (-) True G194226
LOC118936835 mRNA downstream 16805 83114353 ~ 83121120 (-) True LOC118936835
XM_021574233.2 mRNA downstream 26711 83069019 ~ 83111214 (-) True LOC110497820
XM_036956913.1 mRNA downstream 79955 83027054 ~ 83057970 (-) True LOC110502165
XM_036956903.1 mRNA downstream 79956 83027054 ~ 83057969 (-) False LOC110502165
XM_021574209.2 mRNA downstream 115823 83008120 ~ 83022102 (-) True LOC110497815
XM_021574271.2 mRNA upstream 17494 83155680 ~ 83169035 (-) False LOC110497842
XM_036934294.1 mRNA upstream 81778 83219964 ~ 83223972 (-) False LOC110502187
XM_036956986.1 mRNA upstream 86187 83224373 ~ 83239116 (-) False LOC110497857
XM_036956992.1 mRNA upstream 86187 83224373 ~ 83239116 (-) True LOC110497857
XM_021574419.2 mRNA upstream 597525 83735711 ~ 83777336 (-) True LOC110497937
TU219446 other downstream 129949 83005830 ~ 83007976 (-) True G193755
TU219436 other downstream 225421 82901640 ~ 82912504 (-) True G193745
TU217319 other downstream 1944080 81192528 ~ 81193845 (-) True cart2
TU217118 other downstream 2216510 80915679 ~ 80921415 (-) False G191669
TU216232 other downstream 2585441 80552127 ~ 80552484 (-) True G190857
TU219891 other upstream 81836 83220022 ~ 83223144 (-) True LOC110502187
TU220290 other upstream 477380 83615566 ~ 83616034 (-) True G194491
TU221290 other upstream 743354 83881540 ~ 83904451 (-) True G195427
TU221355 other upstream 839779 83977965 ~ 83982167 (-) True G195486
TU221798 other upstream 1471548 84609734 ~ 84639756 (-) True LOC110498022

Expression Profile