RNA id: TU220166



Basic Information


Item Value
RNA id TU220166
length 217
lncRNA type intronic
GC content 0.39
exon number 1
gene id G194371
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 83502169 ~ 83502385 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTATTTCGATAGGAATTTCCGTAAGAGAAAATACATGTAATTGCCGTAATGGCGTAACATGTTGTAAGGGACTTCTGTCAAAAGATGAAATGGCAGTTTGATTAAAGATTGAAGGAAGAAATTTGAAGCTGGCTTGTGATCAAAACAAAGCAAGGCTGACATGAGTCATCAGTATGCACAGTATTGGCCagcttgttggtgtgtgtgtgtttgtgag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU220163 lncRNA upstream 1931 83499829 ~ 83500238 (+) True G194368
TU220161 lncRNA upstream 3492 83498441 ~ 83498677 (+) True G194366
TU220047 lncRNA upstream 69735 83432197 ~ 83432434 (+) True G194267
TU220046 lncRNA upstream 70032 83431906 ~ 83432137 (+) True G194266
TU220043 lncRNA upstream 72301 83429668 ~ 83429868 (+) True G194263
TU220169 lncRNA downstream 5405 83507790 ~ 83508009 (+) True G194374
TU220175 lncRNA downstream 21866 83524251 ~ 83524472 (+) True G194380
TU220157 lncRNA downstream 92514 83594899 ~ 83597212 (+) True G194362
TU220394 lncRNA downstream 247631 83750016 ~ 83750257 (+) True G194594
TU220395 lncRNA downstream 248152 83750537 ~ 83750842 (+) True G194595
XM_021574370.2 mRNA upstream 30386 83433218 ~ 83471783 (+) False LOC110497903
XM_021574407.2 mRNA downstream 159566 83661951 ~ 83682409 (+) True LOC110497928
LOC110497962 mRNA downstream 311815 83814200 ~ 83818689 (+) True LOC110497962
XM_036957193.1 mRNA downstream 321198 83823583 ~ 83978085 (+) False LOC110497968
XM_036957189.1 mRNA downstream 321198 83823583 ~ 83979825 (+) False LOC110497968
XM_036957190.1 mRNA downstream 321198 83823583 ~ 83979825 (+) False LOC110497968
TU219583 other upstream 377204 83119327 ~ 83124965 (+) True LOC110497837
TU218970 other upstream 847739 82652633 ~ 82654430 (+) True G193339
TU218791 other upstream 1079987 82418246 ~ 82422182 (+) True LOC110497686
TU218778 other upstream 1098334 82401113 ~ 82403835 (+) True G193170
TU218731 other upstream 1113648 82366285 ~ 82388521 (+) True LOC110497665
TU220190 other downstream 56535 83558920 ~ 83559598 (+) True G194395
TU220995 other downstream 1094025 84596410 ~ 84600324 (+) True G195155
TU222039 other downstream 1508079 85010464 ~ 85020034 (+) True LOC110498034
TU223067 other downstream 2633231 86135616 ~ 86136608 (+) True G197069
TU224599 other downstream 3535126 87037511 ~ 87039236 (+) True G198417

Expression Profile