RNA id: TU220190



Basic Information


Item Value
RNA id TU220190
length 619
RNA type TUCP
GC content 0.43
exon number 2
gene id G194395
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 83558920 ~ 83559598 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATAacatgaagaagtggaggaatAGCGGGAAGAAGTGGAGGAATAacatgaagaagtggaggaatAGCGGGAAGAAGTGGAGGAATagcatgaagaagtggaggaatAACGGGAAGAAGTGGAGGAATAGCATGAAGAAGTGGAAGAATAACATGAAGAAGTGGAAGAATAacatgaagaagtggaggaatAGCGGGAAGAAGTGGAGGAATAacatgaagaagtggaggaatAACGGGAAGAAGTGGAGGATGAGCATGAAGAAGTGGAAGAATAacatgaagaagtggaggaatAGCGGGAAGAAGTGGAGGAATAacatgaagaagtggaggaatAGCGGGAAGAAGTGGAGGAATagcatgaagaagtggaggaatAACGGGAAGAAGTGGAGGATGAGCATGAAGAAGTGGAAGAATAacatgaagaagtggaggaataacatgaagaagtggaggaatagcgtgaagaagtggaggaatagcatgaagaagtggaggatgagcatgaagaagtggaggaataacatgaagaagtggaggaataacatgaagaagtggaggaatagcgtgaagaagtggaggaatagcatgaagaagtggaggaataacatgaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU220175 lncRNA upstream 34448 83524251 ~ 83524472 (+) True G194380
TU220169 lncRNA upstream 50911 83507790 ~ 83508009 (+) True G194374
TU220166 lncRNA upstream 56535 83502169 ~ 83502385 (+) True G194371
TU220163 lncRNA upstream 58682 83499829 ~ 83500238 (+) True G194368
TU220161 lncRNA upstream 60243 83498441 ~ 83498677 (+) True G194366
TU220157 lncRNA downstream 35301 83594899 ~ 83597212 (+) True G194362
TU220394 lncRNA downstream 190418 83750016 ~ 83750257 (+) True G194594
TU220395 lncRNA downstream 190939 83750537 ~ 83750842 (+) True G194595
TU220403 lncRNA downstream 204875 83764473 ~ 83764767 (+) True G194603
TU220410 lncRNA downstream 212373 83771971 ~ 83772186 (+) True G194610
XM_021574361.2 mRNA upstream 87137 83433218 ~ 83471783 (+) False LOC110497903
XM_021574370.2 mRNA upstream 87137 83433218 ~ 83471783 (+) False LOC110497903
XM_021574379.2 mRNA upstream 87137 83433218 ~ 83471783 (+) False LOC110497903
XM_021574386.2 mRNA upstream 87137 83433218 ~ 83471783 (+) False LOC110497903
XM_021574395.2 mRNA upstream 87137 83433218 ~ 83471783 (+) False LOC110497903
XM_021574407.2 mRNA downstream 102353 83661951 ~ 83682409 (+) True LOC110497928
LOC110497962 mRNA downstream 254602 83814200 ~ 83818689 (+) True LOC110497962
XM_036957193.1 mRNA downstream 263985 83823583 ~ 83978085 (+) False LOC110497968
XM_036957189.1 mRNA downstream 263985 83823583 ~ 83979825 (+) False LOC110497968
XM_036957190.1 mRNA downstream 263985 83823583 ~ 83979825 (+) False LOC110497968
TU219583 other upstream 433955 83119327 ~ 83124965 (+) True LOC110497837
TU218970 other upstream 904490 82652633 ~ 82654430 (+) True G193339
TU218791 other upstream 1136738 82418246 ~ 82422182 (+) True LOC110497686
TU218778 other upstream 1155085 82401113 ~ 82403835 (+) True G193170
TU218731 other upstream 1170399 82366285 ~ 82388521 (+) True LOC110497665
TU220995 other downstream 1036812 84596410 ~ 84600324 (+) True G195155
TU222039 other downstream 1450866 85010464 ~ 85020034 (+) True LOC110498034
TU223067 other downstream 2576018 86135616 ~ 86136608 (+) True G197069
TU224599 other downstream 3477913 87037511 ~ 87039236 (+) True G198417
TU224773 other downstream 3590604 87150202 ~ 87150490 (+) True G198575

Expression Profile