RNA id: TU220995


Basic Information

Item Value
RNA id TU220995
length 3835
RNA type TUCP
GC content 0.41
exon number 2
gene id G195155
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 84596410 ~ 84600324 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTAAACTAGGTATTTTTTGCATAGACGGAACAGTGAGGTTAAAGAAAGCCAGAATGGAATGGCACAGTAAACTCCAATAACTACCACACAGGAAGGACAGATGACTTCATGGGGTAAAGCTCAGTAAAAAAAATACTCGTACCCACATCAAGCAGTAAAAATACTAGATAAAATGGCCAATGTTATAGGATGCTCATCATCTGTAGAAACCAACTCAtaaaatcagagagagagagagagagactctgatGACAACTGTCATTTGAGTTTCTATTAAGATAGTTCATCACACTGTCTGCCGTACCGGTCCCGATTCAAACATATACGGTATAGTTTTTTAGATTCAAACATATACGGTATAGTTAACAGTGCCAACAAAAAAGCAACACATCAACAATGTCAGTCTTCAAACATGAAAGGCAAATGAGTGTACAGGGTATCATGGAATTTTACGACACACTTTCCTTTATTTCAAAAAATAGCAGGATTTAAAGAATGAAATGTAGTGCACCACCTTATATTCAGAGTGATTTTACATGTAGCAGAGAAACTCCACAGGACAAGGCTGACATGGAGCAGATAATACTGCCGTTTGCCACTACATCAAACACACTATTCAAGAGCATACACTTCAGAACAGCTCAGATAGTCAGCTTTAGTGGTGGGGGATTAGAGAAGAGATTATACAAATATGTCAAAGGTGGTAGATAGAAATGAGCTGCTTCCTTTCAAATTCCCTCATAGCCGACAAAACCCCAACAACCATTCTTCCCTTTCCGTCTCTAGTCTGTGGCAGTGTTTCCATGTGAAGAGAGTCAATACTTAATGCTCATTCCAAATCCATGCATGAAATGTATCTCTCACTACAAGCTGCAATAGTGTAAAAACATGAATACAGTACTAACCTCAAAAAACATATGAACATTTCATATACACTGCTCCTGAATGAAAATGTACAAATGCAAACAAACTATCAAAGgattaaaatatgaataaaataacAATTAATGGGTAGGATATTAGTTATCACCCATACAGCTGAGAAAATGATTTCCAAAAATATACAGTCAGAGAGAGCGTAGGTGTTAGTTGGTAAGATCCTGCTGTCATTTAGAATTTCATATCAAATGATGCCAATAGGTATTAGGTTCATGAGTTCCTTCCTACTGTAGAGGTGCAACTGCAACAGTTGATCATTTGTGAAATTATATTATTTACACTCAGGACTAGCATAAGCTTAATGCAGTAAAAGGATTTATGTTGCTTAGTCAGTGTCATCTGAGATTTAACACATTCCACAGGGCAAGGTTGGGCAGGCATTTATAAAAGTGGTACAGGCATGGTTAAAGACATACTGCAGATAATAGAATAGCACTCTTAATTTAAAAGATCTTCATATATCGTCCTACTCTGACTGCATGTTCCTCCCTCAAAACGGGACTTGGATAAATGCCTGTGGCAAAGTTAAGACAGGAAGGTGGTTTAGTTGCACCTTGAACAGGAAAGTTTATTTTATCTTCAACTCTCCCGTCTAACCATCCTTTTATAATCCCGAGGATAAAATACTAATGATGTTATGTTCTCCGGATAACTGACAGTGAGCTTCAGACAAAACAAAGCCAAgtagaacatagtaaaacagCATATTGTATAAAAGCAAGAGACAAAAACAATTTGTGTTAAAGTAACAGGCCTTCTTATACTGCACCCCTACGAACATGAACAAACAACAATTGTTAAAACACTGAGAAACCAATTGACGATGGGAGAATGTGAGAGAAGCAAAGACATGAATGAATTCCTTCAGAAGAACAGAAACATTTCTGAATGGTTGAAAACTGACATTTCAAAGAGGGCAGTGACAGTTACATGAATGACAACGGAAAAACAGTTTGGGATTTTGAGATAATTCTTGAACCACGTCTGACATATAAACAGTGTGAAGCTGGTTCGTCTTCAGGATTTTtaaatatatatctatctatcttcaTGCTGAAAAGGCTATTCTGCATTTCATTCAACATCAAACCATTCCACCCCAAATCAGTTCACACAATGTGGCAATGTCAGACTTTTACAATACAGTAATGATCACAGATATGATCAGTTAAGTCTATGATGTTAGATGCAGTATTACTTCTGGGAGCAAACATAGTGACAAATAAAACGCCCCTCACCACCACCCAATCTTACTCAAGGGAGAGGGTGCAAGGATTTACAAGGGAGGTACAAAGGATACACATGTAGGTCTACACTCTACAGCAAACAAGTTCTTAAGGGACCAAAAACAACTGTCACGTCGGTACAAATGTCTATCCTGGCATGTACCTTGCAGAATTTGCTGGAGCGCTAAATTGTGACGACTGTTTGTGGATGCACCCAGGCTGAGGGGATGTGAAACCTGTGCTTTACATCAGCAGCTGTCATGTTTTCCCTGTGGAGTATGACGGGGGCATCCGGTGAATCAGAGGTAAAGGTGAGCAACAACCAACTGAGCCTGTGACGCAGCTACCCACAAACCAGCATCTGCCCGAATCTACCACTATGTAGGGTATGTACATCCCAATATGTTCAAATAAAGATGTCCTAATCAGCCTTAATTAATGACCTTAGATGATCCTGCAGATGATCCTTGCTGCAGACGGAGAGTGTAAAAGCTAGGCAGCAGTGTCTCTGAGCTAGCTGTGTTTGGTTACATTACCTCTACTTCCCCTTTATTCTTCATGTAGCAGCAATGCAGTGTCAGAGTTCTTACACTTCTTATCCCAAACAGAATCCTAGCCCTAACCCTCCTACATTTGTAAGATCACATTTATTAGGGCCTCCCGGCTGgggcagtggttaagggcgccagctgtgccaccagagactctctgggttcgtgcccaggctctgtcgtaaccagccgcgaccgggaggtccgtggggcgacgcacaattggcctagcgtcgtccgggttagggagggtttggccggtagggaaatccttgtctcattggttgggttgtgtattggaggatgcatgactttcaaccttcgtctctcctgagcccgtacgggagttgtagcgatgagacaagatagtagctactaaacaattggataccatgaaattggggagaaaaagaggtcAAATTcataaaaatattacattttttagCTTTGCAACTTCTGGGCCCGATTATCTAACTTCTTATCAAATTTCCCAAAGTACAGTAAACATTCAGCCAGTTCAGCCAACCTCCATGTTAATGATGAATCAGTTTATCGATTACTACAAGCAGACGGTTGGCAGTGAAAGCCTCTTAAAGTTCCCTCTTCTTCTGCACGATGACATGTTAAAGGAAAACTGGGTTGCGTTCATTAGGGCAAGCATTGGAAAATGTGCGTTTCCAGGTAGTCCCACACTGTTTCGGTCTGTTTTGATGGAGCCTAATGGACATGATCCTGTTGGTAAAGCCCTCCTAAGTAATTTAGAGTGTAGATATCCAAGTGGCCTGAACAGAACTACACTTGTTGTTCAGGACTCCTGTGGTTGAGCCATACATTGACCTACGTTGTGGCGCCAGTAACAGGACGCGTTGCCGTATCTAAACCACTGCATCACCTTTTGATCCGATTCCCTCCCTCACCTTCCACCCCCTCTGTGACAGACTGAAGCAGGGGATGTGCTTTGAAAACTACAACAGCAGTAGCATCCAGACTAGAGGTATAGATAGATACATCATCACTTAGTCTAGAAGGAATGTCAGTGGAAATGTGTACTGCGAAGAGTTTCTATCCCTCCTGCCGTTCTGACATgtaaaaaggaagagagagaggaagaggagaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU220764 lncRNA upstream 300663 84289612 ~ 84295747 (+) False LOC110497999
TU220765 lncRNA upstream 300663 84289612 ~ 84295747 (+) False LOC110497999
TU220767 lncRNA upstream 300663 84289612 ~ 84295747 (+) False LOC110497999
TU220771 lncRNA upstream 300663 84289612 ~ 84295747 (+) True LOC110497999
TU220783 lncRNA upstream 413092 84181330 ~ 84183318 (+) True G194947
TU220999 lncRNA downstream 3628 84603952 ~ 84681822 (+) False G195158
TU220998 lncRNA downstream 81071 84681395 ~ 84685605 (+) True G195158
TU221102 lncRNA downstream 126362 84726686 ~ 84727394 (+) True G195247
TU221158 lncRNA downstream 192243 84792567 ~ 84800126 (+) True G195296
TU221159 lncRNA downstream 196912 84797236 ~ 84804707 (+) True G195297
XM_036957300.1 mRNA upstream 54749 84424371 ~ 84541661 (+) False LOC110498015
XM_036957310.1 mRNA upstream 54749 84424371 ~ 84541661 (+) False LOC110498015
XM_036957314.1 mRNA upstream 54749 84424371 ~ 84541661 (+) False LOC110498015
XM_036957315.1 mRNA upstream 54749 84424371 ~ 84541661 (+) False LOC110498015
XM_036957316.1 mRNA upstream 54749 84424371 ~ 84541661 (+) False LOC110498015
XM_036957441.1 mRNA downstream 409744 85010068 ~ 85054392 (+) False LOC110498034
XM_036957448.1 mRNA downstream 409744 85010068 ~ 85054392 (+) False LOC110498034
XM_036934715.1 mRNA downstream 591690 85192014 ~ 85194828 (+) True LOC110498064
XM_036934731.1 mRNA downstream 596285 85196609 ~ 85198102 (+) True LOC118937296
XM_021574670.2 mRNA downstream 605954 85206278 ~ 85367562 (+) True LOC110498083
TU220190 other upstream 1036812 83558920 ~ 83559598 (+) True G194395
TU219583 other upstream 1471445 83119327 ~ 83124965 (+) True LOC110497837
TU218970 other upstream 1941980 82652633 ~ 82654430 (+) True G193339
TU218791 other upstream 2174228 82418246 ~ 82422182 (+) True LOC110497686
TU218778 other upstream 2192575 82401113 ~ 82403835 (+) True G193170
TU222039 other downstream 410140 85010464 ~ 85020034 (+) True LOC110498034
TU223067 other downstream 1535292 86135616 ~ 86136608 (+) True G197069
TU224599 other downstream 2437187 87037511 ~ 87039236 (+) True G198417
TU224773 other downstream 2549878 87150202 ~ 87150490 (+) True G198575
TU225027 other downstream 2893299 87493623 ~ 87496735 (+) True G198784

Expression Profile