RNA id: TU222219


Basic Information

Item Value
RNA id TU222219
length 530
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id G196274
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 85049550 ~ 85056001 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaagtttagagggacggccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatctttttttatccaaatccggctttaaacttcttcacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctctgcgcttttgacggacctctgagactatcacagtgcagttgcatttatacggagacttgattacacacaggtggattgtatttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacttctggagagagtttgctgcactgaaagtaaaggggctgaataattttgcacgcccaatttttcagtttttgagttgttaaaaaagtttgaaatatccaataaatgtcgttccacttcatgattgtgtcccacttgttgttgattcttcacaaaaaaatacagttttatatctttatgtttgaagcctgaaatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221967 lncRNA downstream 199096 84850156 ~ 84850454 (-) True G196029
TU221935 lncRNA downstream 246083 84795894 ~ 84803467 (-) True G196000
TU221934 lncRNA downstream 248456 84793286 ~ 84801094 (-) True G195999
TU221791 lncRNA downstream 449215 84596433 ~ 84600335 (-) False LOC110498022
TU221646 lncRNA downstream 629655 84381566 ~ 84419895 (-) True G195734
TU222221 lncRNA upstream 89 85056090 ~ 85061020 (-) True G196275
TU222260 lncRNA upstream 51921 85107922 ~ 85108548 (-) True G196310
TU222276 lncRNA upstream 61658 85117659 ~ 85117883 (-) True G196325
TU222558 lncRNA upstream 138896 85194897 ~ 85198587 (-) True G196594
TU222609 lncRNA upstream 206551 85262552 ~ 85263420 (-) True G196643
XM_021574569.2 mRNA downstream 138672 84596933 ~ 84910878 (-) False LOC110498022
XM_021574564.2 mRNA downstream 316163 84596933 ~ 84733387 (-) False LOC110498022
XM_021580083.1 mRNA downstream 464143 84556466 ~ 84585407 (-) True LOC110502226
XM_021574496.2 mRNA downstream 873812 84030716 ~ 84175738 (-) True tbxas1
XM_021574487.2 mRNA downstream 873820 84030716 ~ 84175730 (-) False tbxas1
XM_021574594.2 mRNA upstream 2746 85058747 ~ 85098054 (-) False LOC110498041
XM_021574603.2 mRNA upstream 2746 85058747 ~ 85102785 (-) True LOC110498041
XM_036957475.1 mRNA upstream 414938 85470939 ~ 85487796 (-) True LOC110502232
XM_021574712.2 mRNA upstream 482382 85538383 ~ 85545472 (-) True LOC110498116
XM_036934325.1 mRNA upstream 641419 85697420 ~ 85699798 (-) True LOC118936851
TU221798 other downstream 409794 84609734 ~ 84639756 (-) True LOC110498022
TU221355 other downstream 1067383 83977965 ~ 83982167 (-) True G195486
TU221290 other downstream 1145099 83881540 ~ 83904451 (-) True G195427
TU220290 other downstream 1433516 83615566 ~ 83616034 (-) True G194491
TU219891 other downstream 1826406 83220022 ~ 83223144 (-) True LOC110502187
TU223542 other upstream 780298 85836299 ~ 85843493 (-) False G197498
TU223547 other upstream 780298 85836299 ~ 85843493 (-) False G197498
TU223549 other upstream 780298 85836299 ~ 85843493 (-) True G197498
TU223618 other upstream 903844 85959845 ~ 85963665 (-) True G197554
TU224521 other upstream 1847035 86903036 ~ 86903956 (-) True G198342

Expression Profile