RNA id: TU222037



Basic Information


Item Value
RNA id TU222037
length 355
lncRNA type sense_over
GC content 0.45
exon number 2
gene id G196095
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 85050212 ~ 85056541 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cataaaaagtgttgtttaaagtttgtcacaagccacctgggagacacaccaaacatgtggaagaaggtgctctggtcagattaaaccataaattgaactttttggcaacaatgcaaaacgttatgtttggcataaaagcaacacagctcatcaccctgaacacaccatccccactgtccaacatggtggtggcagcatcatggtttgggcctgcttttcttcagcagggacagggaagatggttaaaattgatgggaagatggatggagccaaatacaggaccattctggaagaaaacctgatggagtctgcaaaagacctgagactgggacagagatttgtcttccaacaagac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU221159 lncRNA upstream 245505 84797236 ~ 84804707 (+) True G195297
TU221158 lncRNA upstream 250086 84792567 ~ 84800126 (+) True G195296
TU221102 lncRNA upstream 322818 84726686 ~ 84727394 (+) True G195247
TU220998 lncRNA upstream 364607 84681395 ~ 84685605 (+) True G195158
TU220999 lncRNA upstream 368390 84603952 ~ 84681822 (+) False G195158
TU222250 lncRNA downstream 48187 85104728 ~ 85104962 (+) True G196301
TU222277 lncRNA downstream 62604 85119145 ~ 85119429 (+) True G196326
TU222290 lncRNA downstream 70860 85127401 ~ 85127602 (+) True G196338
TU222312 lncRNA downstream 92914 85149455 ~ 85151792 (+) True G196353
TU222483 lncRNA downstream 331541 85388082 ~ 85393055 (+) True G196522
XM_036957388.1 mRNA upstream 508551 84424371 ~ 84541661 (+) False LOC110498015
XM_036934715.1 mRNA downstream 135473 85192014 ~ 85194828 (+) True LOC110498064
XM_036934731.1 mRNA downstream 140068 85196609 ~ 85198102 (+) True LOC118937296
XM_021574670.2 mRNA downstream 149737 85206278 ~ 85367562 (+) True LOC110498083
XM_021574681.2 mRNA downstream 408513 85465054 ~ 85470682 (+) True LOC110498095
XM_036957497.1 mRNA downstream 459078 85515619 ~ 85589775 (+) False LOC110498104
TU222039 other upstream 30178 85010464 ~ 85020034 (+) True LOC110498034
TU220995 other upstream 449888 84596410 ~ 84600324 (+) True G195155
TU220190 other upstream 1490614 83558920 ~ 83559598 (+) True G194395
TU219583 other upstream 1925247 83119327 ~ 83124965 (+) True LOC110497837
TU218970 other upstream 2395782 82652633 ~ 82654430 (+) True G193339
TU223067 other downstream 1079075 86135616 ~ 86136608 (+) True G197069
TU224599 other downstream 1980970 87037511 ~ 87039236 (+) True G198417
TU224773 other downstream 2093661 87150202 ~ 87150490 (+) True G198575
TU225027 other downstream 2437082 87493623 ~ 87496735 (+) True G198784
TU225054 other downstream 2479395 87535936 ~ 87536928 (+) True G198811

Expression Profile