RNA id: TU222483


Basic Information

Item Value
RNA id TU222483
length 331
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G196522
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 85388082 ~ 85393055 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgaatgaggacccaaaagcgaattaacaaacagagtttctttaatgatgaacacacgtgggctcagatggacaggtagattccgacaggacaggacaaggttgcagcaaacacgatgatagtctggttcaggcatgagacacacaaacaagaatccgacaaagacaggagcagaaacagagagagatatagggacctaatcagagggaaaaagggaacaggtgagaaaaggggtgaatgaggtagtcagagaagacaaggaacagctgggggaaagagggacagaaacggtaacctagtacgaccagcagagggagacagggtgaaagga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222312 lncRNA upstream 236290 85149455 ~ 85151792 (+) True G196353
TU222290 lncRNA upstream 260480 85127401 ~ 85127602 (+) True G196338
TU222277 lncRNA upstream 268653 85119145 ~ 85119429 (+) True G196326
TU222250 lncRNA upstream 283120 85104728 ~ 85104962 (+) True G196301
TU222037 lncRNA upstream 331541 85050212 ~ 85056541 (+) True G196095
TU222756 lncRNA downstream 56071 85449126 ~ 85449450 (+) True G196781
TU222758 lncRNA downstream 58861 85451916 ~ 85452121 (+) True G196783
TU222763 lncRNA downstream 64853 85457908 ~ 85458134 (+) True G196788
TU222766 lncRNA downstream 67782 85460837 ~ 85461528 (+) True G196791
TU222791 lncRNA downstream 108836 85501891 ~ 85502224 (+) True G196816
XM_021574670.2 mRNA upstream 20520 85206278 ~ 85367562 (+) True LOC110498083
XM_036934731.1 mRNA upstream 189980 85196609 ~ 85198102 (+) True LOC118937296
XM_036934715.1 mRNA upstream 193254 85192014 ~ 85194828 (+) True LOC110498064
XM_036957441.1 mRNA upstream 333690 85010068 ~ 85054392 (+) False LOC110498034
XM_036957448.1 mRNA upstream 333690 85010068 ~ 85054392 (+) False LOC110498034
XM_021574681.2 mRNA downstream 71999 85465054 ~ 85470682 (+) True LOC110498095
XM_036957497.1 mRNA downstream 122564 85515619 ~ 85589775 (+) False LOC110498104
XM_036957511.1 mRNA downstream 122564 85515619 ~ 85592256 (+) False LOC110498104
XM_036957505.1 mRNA downstream 122564 85515619 ~ 85594581 (+) True LOC110498104
XM_021574732.2 mRNA downstream 307715 85700770 ~ 85711408 (+) True LOC110498123
TU222039 other upstream 368048 85010464 ~ 85020034 (+) True LOC110498034
TU220995 other upstream 787758 84596410 ~ 84600324 (+) True G195155
TU220190 other upstream 1828484 83558920 ~ 83559598 (+) True G194395
TU219583 other upstream 2263117 83119327 ~ 83124965 (+) True LOC110497837
TU218970 other upstream 2733652 82652633 ~ 82654430 (+) True G193339
TU223067 other downstream 742561 86135616 ~ 86136608 (+) True G197069
TU224599 other downstream 1644456 87037511 ~ 87039236 (+) True G198417
TU224773 other downstream 1757147 87150202 ~ 87150490 (+) True G198575
TU225027 other downstream 2100568 87493623 ~ 87496735 (+) True G198784
TU225054 other downstream 2142881 87535936 ~ 87536928 (+) True G198811

Expression Profile