RNA id: TU222758


Basic Information

Item Value
RNA id TU222758
length 206
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G196783
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 85451916 ~ 85452121 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAAAGATGTAACCGTTTTAATATAATTTCAGTGACAGCCTTTTAGAAGATTGATTACTGACATTATTGCAACAATGCAAATCTCTGTATGTCAAATAATTGCCATTTCAAAATAGTGTGCATGACTTTGTATgtgcatattttttatttaactaggcaagtcagttaagaacaaattcttattttcaatgatggcctaggaacag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222756 lncRNA upstream 2466 85449126 ~ 85449450 (+) True G196781
TU222483 lncRNA upstream 58861 85388082 ~ 85393055 (+) True G196522
TU222312 lncRNA upstream 300124 85149455 ~ 85151792 (+) True G196353
TU222290 lncRNA upstream 324314 85127401 ~ 85127602 (+) True G196338
TU222277 lncRNA upstream 332487 85119145 ~ 85119429 (+) True G196326
TU222763 lncRNA downstream 5787 85457908 ~ 85458134 (+) True G196788
TU222766 lncRNA downstream 8716 85460837 ~ 85461528 (+) True G196791
TU222791 lncRNA downstream 49770 85501891 ~ 85502224 (+) True G196816
TU222859 lncRNA downstream 150452 85602573 ~ 85603490 (+) True G196877
TU222889 lncRNA downstream 323367 85775488 ~ 85777938 (+) True G196905
XM_021574670.2 mRNA upstream 84354 85206278 ~ 85367562 (+) True LOC110498083
XM_036934731.1 mRNA upstream 253814 85196609 ~ 85198102 (+) True LOC118937296
XM_036934715.1 mRNA upstream 257088 85192014 ~ 85194828 (+) True LOC110498064
XM_036957441.1 mRNA upstream 397524 85010068 ~ 85054392 (+) False LOC110498034
XM_021574681.2 mRNA downstream 12933 85465054 ~ 85470682 (+) True LOC110498095
XM_036957497.1 mRNA downstream 63498 85515619 ~ 85589775 (+) False LOC110498104
XM_036957511.1 mRNA downstream 63498 85515619 ~ 85592256 (+) False LOC110498104
XM_036957505.1 mRNA downstream 63498 85515619 ~ 85594581 (+) True LOC110498104
XM_021574732.2 mRNA downstream 248649 85700770 ~ 85711408 (+) True LOC110498123
TU222039 other upstream 431882 85010464 ~ 85020034 (+) True LOC110498034
TU220995 other upstream 851592 84596410 ~ 84600324 (+) True G195155
TU220190 other upstream 1892318 83558920 ~ 83559598 (+) True G194395
TU219583 other upstream 2326951 83119327 ~ 83124965 (+) True LOC110497837
TU218970 other upstream 2797486 82652633 ~ 82654430 (+) True G193339
TU223067 other downstream 683495 86135616 ~ 86136608 (+) True G197069
TU224599 other downstream 1585390 87037511 ~ 87039236 (+) True G198417
TU224773 other downstream 1698081 87150202 ~ 87150490 (+) True G198575
TU225027 other downstream 2041502 87493623 ~ 87496735 (+) True G198784
TU225054 other downstream 2083815 87535936 ~ 87536928 (+) True G198811

Expression Profile