RNA id: TU223618


Basic Information

Item Value
RNA id TU223618
length 895
RNA type TUCP
GC content 0.60
exon number 2
gene id G197554
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 85959845 ~ 85963665 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtccgactctccttctcatacagaaaaccgtgacagaatcacccaccacaacaggaccaagcggcgtggtaacgggcaacagcagcgAAAGGAGGAAAGGACTTGGGAagaaatagacaggtgggcggtcgacccagagagagtgccggagcccgcctgggattcgatggagcagtgcgcggaaggttatcggagaatggagtttgcgacgcaagcacggcggcgcggacggaggcccgagagtcagccccaaacatttcttggggggggggggggctcagggagagtgtggcagagtcagggttcagaccagagccaactccccctgtttatcgtgaggagccaaggaggagaccagaatcagagccggtgttggaggtgagcgaagcagagactgtgaaggagttaatggggaaattggaggagagagttatgagggagttgctgtgttggtgctttagGTACGATATTCGCCCGatggagcgtgtcggggatttgatggcaccagcgctccatacttgtcctgaggtgcgtgttagtcggctggtgaagattgtgccagcctcacgcactaggcctcctgtgcacctccctagccttgcacgtcctgtgccagccctgctctcaagctCTCCAGTAcaccttcacggtccggtccatcctgtgccacctccacacaccagccctccggtagcagctccccgcaccaggcttcctgtgcgtgttctcggcccagtaccaccagtgccagcaccacgcatcaggcctacagtgcgccttgcctgtccagcgctgtcagagccttcctcctctccagcgctgccggagtctcccgcctatctagctctgtcagagccttcctcctctacagcgctgccggagtctcccgcctgtt

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223543 lncRNA downstream 123158 85831239 ~ 85836687 (-) False G197498
TU223483 lncRNA downstream 205627 85752441 ~ 85754218 (-) True G197441
TU223460 lncRNA downstream 214441 85664173 ~ 85745404 (-) True G197424
TU223427 lncRNA downstream 275319 85640538 ~ 85684526 (-) True G197394
TU223358 lncRNA downstream 476220 85483027 ~ 85483625 (-) True G197328
TU223613 lncRNA upstream 63225 86026890 ~ 86043305 (-) True G197552
TU223683 lncRNA upstream 110608 86074273 ~ 86074839 (-) True G197613
TU223706 lncRNA upstream 145398 86109063 ~ 86109468 (-) True G197636
TU223707 lncRNA upstream 146187 86109852 ~ 86110146 (-) True G197637
TU223708 lncRNA upstream 146483 86110148 ~ 86110650 (-) True G197638
XM_021574904.2 mRNA downstream 6946 85948772 ~ 85952899 (-) True LOC110498273
XM_021574894.2 mRNA downstream 11387 85942497 ~ 85948458 (-) False LOC110498255
XM_021574888.2 mRNA downstream 11387 85942498 ~ 85948458 (-) False LOC110498255
XR_005038580.1 mRNA downstream 11387 85942843 ~ 85948458 (-) True LOC110498255
XM_021574863.2 mRNA downstream 33013 85920854 ~ 85926832 (-) True LOC110498224
XM_036957704.1 mRNA upstream 48493 86012158 ~ 86016392 (-) False LOC110498321
XM_036957707.1 mRNA upstream 48493 86012158 ~ 86016427 (-) False LOC110498321
XM_021574957.2 mRNA upstream 48493 86012158 ~ 86016810 (-) False LOC110498321
XM_036957722.1 mRNA upstream 48493 86012158 ~ 86016810 (-) False LOC110498321
XM_036957727.1 mRNA upstream 48493 86012158 ~ 86016810 (-) False LOC110498321
TU223542 other downstream 116352 85836299 ~ 85843493 (-) False G197498
TU223547 other downstream 116352 85836299 ~ 85843493 (-) False G197498
TU223549 other downstream 116352 85836299 ~ 85843493 (-) True G197498
TU221798 other downstream 1320089 84609734 ~ 84639756 (-) True LOC110498022
TU221355 other downstream 1977678 83977965 ~ 83982167 (-) True G195486
TU224521 other upstream 939371 86903036 ~ 86903956 (-) True G198342
TU225173 other upstream 1358474 87322139 ~ 87326469 (-) True G198912
TU228163 other upstream 3643172 89606837 ~ 89609890 (-) True LOC110499346
TU228979 other upstream 4413892 90377557 ~ 90441425 (-) True G202279
TU230773 other upstream 5625547 91589212 ~ 91591049 (-) True G203915

Expression Profile