RNA id: TU223070


Basic Information

Item Value
RNA id TU223070
length 168
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G197072
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 86113000 ~ 86113167 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcaacagtgacgaggcgactcctggatgctggccttctaggcagagttgcaaagaaaaagacatacatcagactggccaataaaaagaaaagatgaagatgggcaaaagaatacagacactggttaaCTTTTTCAAAATAACAGATTTACTTTTTGGAAATTCCCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223135 lncRNA upstream 22179 86089942 ~ 86090821 (+) True G197129
TU223117 lncRNA upstream 39419 86072525 ~ 86073581 (+) True G197116
TU223038 lncRNA upstream 143777 85968813 ~ 85969223 (+) True G197043
TU223030 lncRNA upstream 149403 85959802 ~ 85963597 (+) False G197037
TU223032 lncRNA upstream 149403 85960286 ~ 85963597 (+) True G197037
TU223069 lncRNA downstream 2038 86115205 ~ 86120676 (+) True LOC110498346
TU223068 lncRNA downstream 21934 86135101 ~ 86135427 (+) True G197070
TU223063 lncRNA downstream 28293 86141460 ~ 86146225 (+) True G197065
TU223166 lncRNA downstream 52042 86165209 ~ 86181488 (+) True G197156
TU223064 lncRNA downstream 54786 86167953 ~ 86173911 (+) True G197066
XM_036957747.1 mRNA upstream 1773 86042800 ~ 86111227 (+) False LOC110498335
XM_036957742.1 mRNA upstream 1773 86070515 ~ 86111227 (+) True LOC110498335
XM_021574933.2 mRNA upstream 76229 86016897 ~ 86036771 (+) False LOC110498298
XM_036957703.1 mRNA upstream 78149 86016887 ~ 86034851 (+) False LOC110498298
XM_036957697.1 mRNA upstream 78151 86024844 ~ 86034849 (+) True LOC110498298
XM_036957762.1 mRNA downstream 1458 86114625 ~ 86120626 (+) False LOC110498346
XM_021574974.2 mRNA downstream 1474 86114641 ~ 86121138 (+) False LOC110498346
XM_021574980.2 mRNA downstream 11591 86124758 ~ 86131460 (+) False LOC110498357
XM_021574985.2 mRNA downstream 12173 86125340 ~ 86131467 (+) True LOC110498357
XM_021575047.2 mRNA downstream 310543 86423710 ~ 86470667 (+) False LOC110498407
TU222039 other upstream 1092966 85010464 ~ 85020034 (+) True LOC110498034
TU220995 other upstream 1512676 84596410 ~ 84600324 (+) True G195155
TU220190 other upstream 2553402 83558920 ~ 83559598 (+) True G194395
TU219583 other upstream 2988035 83119327 ~ 83124965 (+) True LOC110497837
TU218970 other upstream 3458570 82652633 ~ 82654430 (+) True G193339
TU223067 other downstream 22449 86135616 ~ 86136608 (+) True G197069
TU224599 other downstream 924344 87037511 ~ 87039236 (+) True G198417
TU224773 other downstream 1037035 87150202 ~ 87150490 (+) True G198575
TU225027 other downstream 1380456 87493623 ~ 87496735 (+) True G198784
TU225054 other downstream 1422769 87535936 ~ 87536928 (+) True G198811

Expression Profile