RNA id: TU223194



Basic Information


Item Value
RNA id TU223194
length 1160
lncRNA type intronic
GC content 0.44
exon number 1
gene id G197183
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 86209293 ~ 86210452 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTATCCGAGATGTATCCTATTTCATCTCCTCCAAGTATCCTATTGGCACACAACCCATCTATACAAACAAGGTGGTTCTGTCTGTGTCCGGTTTGTTAGGGATGTTCCCTCTTGTGTGCCAAATAGGTTTTCCCTTTTTATGCATTGTTTCCTCTTATTAATTACAATACACCTGAAGCTTGATCTAGTTCCTATATTTGTTAATTGGAGATGTAATCTCCAAGTCTAGTGAGAACAGTGTGAGGCACTACTTCCCCAGCAGAGAATCACCCCTGCTGAGCTGAACCAGAAAGCAGCCTCAGTCACAATGGTAGTGTACCAATAGGCTCTGTTCCCACACCCAGTAGAACAAATAAATAGTCCATAATCACTGCCTATCACAACACGCAACACAGGCTGAACCGAAAATGTGCATTCCATGGGAAATCCATAGCGGACAAGTACATGCTCGCTCCTCCACACTGACATTTCAGAGACACAAGGGAGAGATTTGCGGCACATATGGGATGGTCAGAAAGCAGGATGAAAGACGGTCTGGGGAGATGGGGGTTAGGTCCCTTTTAAGAGAAGAATAGGTGGCCATTTTAGATCAGCTAATTTAAGTGAAGCGAGTGTTTCAGTAAAAATATATTCTGGTGTGGAGTGCAGTCAAATAATGTGTTGTTTTCTGGTATGTATAGTTGTTTTTGTGTGCGTGGTCTGAGTTCATTCAATTGTCCAGCTATTTTCATATTTCCAGAGTGATGTAACAAGGGACAACTATTCCATGAAGGATGCAGCAGTTGTCtctaataaaaaaaatacatgttttattgtcacataggTGCAGTGAAAAGTGTTGTTTACAAGGTCATCCATAGTAGTACGGTGCCCCTGGAACAAATTAGGGTTACGtggcttgctcaagggcacatggacAGATTTTTCACATTGTCGACTCAGGTATTTGAACCAGTGacgtgacctttcggttactcctCCAACGCTCcaaccgctagactacctgccaccctactCACCTTCACTTTCAAAACACAAGAAGAGAAATCTATCCTCAAGTAGATAAACAAAGGAAATCCTCTGAAAGGGAGTCTCATTGTTTTTAGGTGAACAGAGAAGCTCATTGGCTGAGAGGTGTACTTTGAACTCCCCTTTTTCTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU223191 lncRNA upstream 2925 86206052 ~ 86206368 (+) True G197180
TU223182 lncRNA upstream 21853 86187091 ~ 86187440 (+) True G197171
TU223181 lncRNA upstream 22559 86186396 ~ 86186734 (+) True G197170
TU223166 lncRNA upstream 27805 86165209 ~ 86181488 (+) True G197156
TU223064 lncRNA upstream 35382 86167953 ~ 86173911 (+) True G197066
TU223202 lncRNA downstream 9807 86220259 ~ 86220464 (+) True G197190
TU223212 lncRNA downstream 37194 86247646 ~ 86248186 (+) True G197200
TU223218 lncRNA downstream 46114 86256566 ~ 86256944 (+) True G197206
TU223219 lncRNA downstream 46668 86257120 ~ 86257366 (+) True G197207
TU223229 lncRNA downstream 60370 86270822 ~ 86271492 (+) True G197216
XM_021574985.2 mRNA upstream 77826 86125340 ~ 86131467 (+) True LOC110498357
XM_021574980.2 mRNA upstream 77833 86124758 ~ 86131460 (+) False LOC110498357
XM_021574974.2 mRNA upstream 88155 86114641 ~ 86121138 (+) False LOC110498346
XM_036957762.1 mRNA upstream 88667 86114625 ~ 86120626 (+) False LOC110498346
XM_036957742.1 mRNA upstream 98066 86070515 ~ 86111227 (+) True LOC110498335
XM_021575047.2 mRNA downstream 213258 86423710 ~ 86470667 (+) False LOC110498407
XM_021575039.2 mRNA downstream 213265 86423717 ~ 86477838 (+) False LOC110498407
XM_021575025.2 mRNA downstream 213268 86423720 ~ 86477838 (+) False LOC110498407
XM_021575031.2 mRNA downstream 213270 86423722 ~ 86477838 (+) True LOC110498407
XM_021575058.2 mRNA downstream 270823 86481275 ~ 86520602 (+) False LOC110498438
TU223067 other upstream 72685 86135616 ~ 86136608 (+) True G197069
TU222039 other upstream 1189259 85010464 ~ 85020034 (+) True LOC110498034
TU220995 other upstream 1608969 84596410 ~ 84600324 (+) True G195155
TU220190 other upstream 2649695 83558920 ~ 83559598 (+) True G194395
TU219583 other upstream 3084328 83119327 ~ 83124965 (+) True LOC110497837
TU224599 other downstream 827059 87037511 ~ 87039236 (+) True G198417
TU224773 other downstream 939750 87150202 ~ 87150490 (+) True G198575
TU225027 other downstream 1283171 87493623 ~ 87496735 (+) True G198784
TU225054 other downstream 1325484 87535936 ~ 87536928 (+) True G198811
TU225538 other downstream 1656425 87866877 ~ 87867967 (+) True G199223

Expression Profile