RNA id: TU223329



Basic Information


Item Value
RNA id TU223329
length 276
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G197304
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 86527514 ~ 86527789 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtcagaaacagactccatgagggtggtatgagggcccgacgtccacaggttggggttgtgcttacagcccaacaccgtgcaggacgtttggcatttgccagagaacaccaagattggcaaattcgccactggcgccctgtgctctttacagatgaaagcaggttcacactgagcacatgtgacagacgtgacagagtctggagacgccatggagaacgttctgctgcctgcaacatcctccagcatgaccggtttggcggtgggtcagtcatggtg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU223328 lncRNA upstream 105 86527187 ~ 86527409 (+) True G197303
TU223257 lncRNA upstream 209535 86317641 ~ 86317979 (+) True G197244
TU223231 lncRNA upstream 250822 86276210 ~ 86276692 (+) True G197218
TU223229 lncRNA upstream 256022 86270822 ~ 86271492 (+) True G197216
TU223219 lncRNA upstream 270148 86257120 ~ 86257366 (+) True G197207
TU223330 lncRNA downstream 2553 86530342 ~ 86530709 (+) True G197305
TU223332 lncRNA downstream 4500 86532289 ~ 86532489 (+) True G197307
TU223339 lncRNA downstream 22679 86550468 ~ 86550873 (+) True G197314
TU223969 lncRNA downstream 44845 86572634 ~ 86572844 (+) True G197863
TU224002 lncRNA downstream 100525 86628314 ~ 86633193 (+) True G197894
XM_021575206.2 mRNA upstream 6912 86481275 ~ 86520602 (+) False LOC110498438
XM_021575240.2 mRNA downstream 27686 86555475 ~ 86564249 (+) True LOC110498585
XM_021575248.2 mRNA downstream 45780 86573569 ~ 86624542 (+) False LOC110498595
XM_021575254.2 mRNA downstream 83240 86611029 ~ 86624542 (+) True LOC110498595
trnag-gcc-2 mRNA downstream 191827 86719616 ~ 86719686 (+) True trnag-gcc-2
trnag-gcc-3 mRNA downstream 192580 86720369 ~ 86720439 (+) True trnag-gcc-3
TU223067 other upstream 390906 86135616 ~ 86136608 (+) True G197069
TU222039 other upstream 1507480 85010464 ~ 85020034 (+) True LOC110498034
TU220995 other upstream 1927190 84596410 ~ 84600324 (+) True G195155
TU220190 other upstream 2967916 83558920 ~ 83559598 (+) True G194395
TU219583 other upstream 3402549 83119327 ~ 83124965 (+) True LOC110497837
TU224599 other downstream 509722 87037511 ~ 87039236 (+) True G198417
TU224773 other downstream 622413 87150202 ~ 87150490 (+) True G198575
TU225027 other downstream 965834 87493623 ~ 87496735 (+) True G198784
TU225054 other downstream 1008147 87535936 ~ 87536928 (+) True G198811
TU225538 other downstream 1339088 87866877 ~ 87867967 (+) True G199223

Expression Profile