RNA id: TU223332



Basic Information


Item Value
RNA id TU223332
length 201
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G197307
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 86532289 ~ 86532489 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AATAAGTACTAAGTGTTAAGACACTACAGTCTGGATATTGAAATCATGTAATGttttacttacagttgaagtcggaagtttacatacaccttagccaaatacatttcaactcagtttcacaattgctgacgtttaatcctagttaaaattccctgtcagttaggatcaccactttattttaagaatgtgaaatgtcagaat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU223330 lncRNA upstream 1580 86530342 ~ 86530709 (+) True G197305
TU223329 lncRNA upstream 4500 86527514 ~ 86527789 (+) True G197304
TU223328 lncRNA upstream 4880 86527187 ~ 86527409 (+) True G197303
TU223257 lncRNA upstream 214310 86317641 ~ 86317979 (+) True G197244
TU223231 lncRNA upstream 255597 86276210 ~ 86276692 (+) True G197218
TU223339 lncRNA downstream 17979 86550468 ~ 86550873 (+) True G197314
TU223969 lncRNA downstream 40145 86572634 ~ 86572844 (+) True G197863
TU224002 lncRNA downstream 95825 86628314 ~ 86633193 (+) True G197894
TU224013 lncRNA downstream 115698 86648187 ~ 86648510 (+) True G197905
TU224018 lncRNA downstream 122492 86654981 ~ 86655321 (+) True G197910
XM_021575206.2 mRNA upstream 11687 86481275 ~ 86520602 (+) False LOC110498438
XM_021575240.2 mRNA downstream 22986 86555475 ~ 86564249 (+) True LOC110498585
XM_021575248.2 mRNA downstream 41080 86573569 ~ 86624542 (+) False LOC110498595
XM_021575254.2 mRNA downstream 78540 86611029 ~ 86624542 (+) True LOC110498595
trnag-gcc-2 mRNA downstream 187127 86719616 ~ 86719686 (+) True trnag-gcc-2
trnag-gcc-3 mRNA downstream 187880 86720369 ~ 86720439 (+) True trnag-gcc-3
TU223067 other upstream 395681 86135616 ~ 86136608 (+) True G197069
TU222039 other upstream 1512255 85010464 ~ 85020034 (+) True LOC110498034
TU220995 other upstream 1931965 84596410 ~ 84600324 (+) True G195155
TU220190 other upstream 2972691 83558920 ~ 83559598 (+) True G194395
TU219583 other upstream 3407324 83119327 ~ 83124965 (+) True LOC110497837
TU224599 other downstream 505022 87037511 ~ 87039236 (+) True G198417
TU224773 other downstream 617713 87150202 ~ 87150490 (+) True G198575
TU225027 other downstream 961134 87493623 ~ 87496735 (+) True G198784
TU225054 other downstream 1003447 87535936 ~ 87536928 (+) True G198811
TU225538 other downstream 1334388 87866877 ~ 87867967 (+) True G199223

Expression Profile