RNA id: TU223339



Basic Information


Item Value
RNA id TU223339
length 406
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G197314
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 86550468 ~ 86550873 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cctgttgcaccctcgacaaccactgtgattattattatttgaccctcctggtcatctatgaacatttgaacatcttggccatgttctgttatattctccacccggcacagccagaagaggactggccacccctcatagcctggttcctctctaggtttcttcctaggttctggcttttctagggagtttttcctagccactgtgcttctacacctgcattgcttgctgtttggggttttaggatgggtttctgtacaacactttgtgacatcagctgatgtaagaagggctctataaatacatttgattgatgttGGCGACAAAAAAAGTGCTAAAATCAAAAGGGATTATCAACATTGCCTGACACCTTTGTTCTTGCAAAATAATCTACAACAACTGTAGAAGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU223332 lncRNA upstream 17979 86532289 ~ 86532489 (+) True G197307
TU223330 lncRNA upstream 19759 86530342 ~ 86530709 (+) True G197305
TU223329 lncRNA upstream 22679 86527514 ~ 86527789 (+) True G197304
TU223328 lncRNA upstream 23059 86527187 ~ 86527409 (+) True G197303
TU223257 lncRNA upstream 232489 86317641 ~ 86317979 (+) True G197244
TU223969 lncRNA downstream 21761 86572634 ~ 86572844 (+) True G197863
TU224002 lncRNA downstream 77441 86628314 ~ 86633193 (+) True G197894
TU224013 lncRNA downstream 97314 86648187 ~ 86648510 (+) True G197905
TU224018 lncRNA downstream 104108 86654981 ~ 86655321 (+) True G197910
TU224019 lncRNA downstream 105345 86656218 ~ 86658572 (+) True G197911
XM_021575206.2 mRNA upstream 29866 86481275 ~ 86520602 (+) False LOC110498438
XM_021575240.2 mRNA downstream 4602 86555475 ~ 86564249 (+) True LOC110498585
XM_021575248.2 mRNA downstream 22696 86573569 ~ 86624542 (+) False LOC110498595
XM_021575254.2 mRNA downstream 60156 86611029 ~ 86624542 (+) True LOC110498595
trnag-gcc-2 mRNA downstream 168743 86719616 ~ 86719686 (+) True trnag-gcc-2
trnag-gcc-3 mRNA downstream 169496 86720369 ~ 86720439 (+) True trnag-gcc-3
TU223067 other upstream 413860 86135616 ~ 86136608 (+) True G197069
TU222039 other upstream 1530434 85010464 ~ 85020034 (+) True LOC110498034
TU220995 other upstream 1950144 84596410 ~ 84600324 (+) True G195155
TU220190 other upstream 2990870 83558920 ~ 83559598 (+) True G194395
TU219583 other upstream 3425503 83119327 ~ 83124965 (+) True LOC110497837
TU224599 other downstream 486638 87037511 ~ 87039236 (+) True G198417
TU224773 other downstream 599329 87150202 ~ 87150490 (+) True G198575
TU225027 other downstream 942750 87493623 ~ 87496735 (+) True G198784
TU225054 other downstream 985063 87535936 ~ 87536928 (+) True G198811
TU225538 other downstream 1316004 87866877 ~ 87867967 (+) True G199223

Expression Profile