RNA id: TU224180


Basic Information

Item Value
RNA id TU224180
length 1594
lncRNA type inter_gene
GC content 0.42
exon number 5
gene id G198034
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 86728503 ~ 86732160 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggagagggacgCACACTCTGTAAACAGGTATAGGTGATTCACTGGTCACTGAGCTGgcaagctaaagttagctagttaGTCACAGAAATGTACGTTCAGCCTGTTAATTATTTCAGTCCGATTTGATTTATCTTACGAAGTCAGCATGGCATAGTTTCTTTAGTTTTTGACCTTGACATAGTTGCTGGATATATACTTTCATTTCTGACATACTggcgctgctagctagctaacgctaacGACGCCAGCTGACCTCATATCTGGATGCCTCACTCTAGTCCCTGAGAGAGCAGCATACTGGCCCTCCATTCCCAAACCTGAAGCCCCCTGTCCCCAGCAGGAAAGACCAGGAAAAAGTGTTGGCTTAAGATCTTCCAACCTGCTCGGTGGGTGACTGGTCTTTCCACCAAGCTGTTCCAGGCCTGGAGTGGCACGCTGGAACTTCCAGATGTTTGTAGACCTGAAGCAGTGTGATGTATTCCAGCTGCAGTCGTTTGCCCCTGCATCTGCTACACCGGCAtgtatacacacatgcacactcttcCTTACttggggctctattcaatcacgTCCGCTTTAGCCGACATCCACATAGAGGTCGTGTCTGAGGTGgaactgtgttagagctgtcaaattcacaagcggctcctggcattatacctaacAGAGTCGCATTAACAGAAATCTCATGCAGCCCTGTTTACAAGTTAGAACACTGGAAtttgagatgtaatctacacctcgattTTGCTGATTGAAATCCTCATTATTTAGTTTAATGATTTTGAATTTGAGCGTCATTGTTTCTATATAACCTATACTTTCTAGTTTTGAACTTAATGCGAGTAGGACTGGTGTAGTTTTGTGACAATGATCAAGAACTACCGATTTGACAGATCCAACGCAGTTACACCTCAGACACCGCCAAAACATCTGTTATGCAGGTGTTGGTTATCGCTggttaacgcttgatctgattgaatctaggccttccACTCATTCAGTCTATTTAGTTGTATGATTATTGTCAGTTAAGAAAATTGTGCCTCTCTATTTTAGATATGCCATGCTCAGCAGTTCAGCTGCAGACACAGCAGTCCACTGGTGTGGTATTTAGTTTACCAGCTGCACCAGTTCCTACTACACTGGCCGTGAAGGGAGAAACTTTTAAGGATTACCAGATGGATACAGATCTGCCATGCTCTCCACCACTGCCTGACAGCTTCACCCAGAAGTGCATACACTGGGCCTATCAAGACTGACAAAGCAGAGATGGGTGGCTGAcaaggaaaaataaaaaaacatgcacacacattatcCACAATGTAAATAAGTTGTAATTACTTGTTTATTTAATATTTGCTCCATTTTATTTTAGGATTGGAGATATCTACTCCTATGTATCCATTATCAGTATCTGCTCTAAATATCTATCAAATCAACGTGTGATTGATAATATTGTAAAAGACTTGTGTGTACAGTTTTAGGAAATTCTGTGTACTTTTTTTCTGAGTTGAAAAACAtgcctccctctcacacacacactagacccaaTGTAAATCAATTGTAATAACTTGTTTATTTTATGTATGC

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224175 lncRNA downstream 8351 86719711 ~ 86720152 (-) True G198032
TU224174 lncRNA downstream 20237 86707485 ~ 86708266 (-) False LOC110498636
TU224173 lncRNA downstream 20270 86707651 ~ 86708233 (-) True LOC110498636
TU224140 lncRNA downstream 73963 86648809 ~ 86654540 (-) True G198007
TU224137 lncRNA downstream 80515 86647681 ~ 86647988 (-) True G198005
TU224225 lncRNA upstream 28549 86760709 ~ 86760932 (-) True G198074
TU224379 lncRNA upstream 130748 86862908 ~ 86863261 (-) True G198224
TU224385 lncRNA upstream 138264 86870424 ~ 86870635 (-) True G198230
TU224386 lncRNA upstream 139086 86871246 ~ 86873200 (-) True G198231
TU224513 lncRNA upstream 203243 86935403 ~ 86937181 (-) True G198334
XM_036957981.1 mRNA downstream 9331 86715060 ~ 86719172 (-) False zpd
XM_036957982.1 mRNA downstream 9331 86715060 ~ 86719172 (-) True zpd
XM_036934371.1 mRNA downstream 13507 86707476 ~ 86714996 (-) False LOC110498636
XR_005038618.1 mRNA downstream 27252 86699341 ~ 86701251 (-) True LOC118942936
XM_036934741.1 mRNA downstream 33301 86684087 ~ 86695202 (-) True LOC118937297
XR_002475056.2 mRNA upstream 11772 86743932 ~ 86747131 (-) False LOC110533876
XR_002475057.2 mRNA upstream 11772 86743932 ~ 86747314 (-) True LOC110533876
XM_036958037.1 mRNA upstream 153003 86885163 ~ 86887171 (-) False LOC118942938
XM_036958026.1 mRNA upstream 153003 86885163 ~ 86887339 (-) True LOC118942938
XM_021575350.2 mRNA upstream 206135 86938295 ~ 86967493 (-) False LOC110498693
TU223618 other downstream 764838 85959845 ~ 85963665 (-) True G197554
TU223542 other downstream 885010 85836299 ~ 85843493 (-) False G197498
TU223547 other downstream 885010 85836299 ~ 85843493 (-) False G197498
TU223549 other downstream 885010 85836299 ~ 85843493 (-) True G197498
TU221798 other downstream 2088747 84609734 ~ 84639756 (-) True LOC110498022
TU224521 other upstream 170876 86903036 ~ 86903956 (-) True G198342
TU225173 other upstream 589979 87322139 ~ 87326469 (-) True G198912
TU228163 other upstream 2874677 89606837 ~ 89609890 (-) True LOC110499346
TU228979 other upstream 3645397 90377557 ~ 90441425 (-) True G202279
TU230773 other upstream 4857052 91589212 ~ 91591049 (-) True G203915

Expression Profile