RNA id: TU224978



Basic Information


Item Value
RNA id TU224978
length 681
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G198737
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 87359524 ~ 87360204 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGTTGCTGTTGAGTTTTGTTATTATTCTGTCACAATTTATTACATTTATGGGTCTGTAATCTGCAGGGGACTCTCCAGATTGTTCTGCTTTTAATATAACTGAGATAACTGTTTGATACATGGAGCTAGAAATCACTGAATTGagtgacatacagtacagtgttaagGTTTTAGGATGGTGTGAAAAAATGCTGTAAAGTTAGAATGCTTTAAAAAAATAgagcatcagtaacacactacgtcgccagggactcaaatcctgcagtgccagaggtgtccccctgcttaagccagtacacgtctaggcccgtctgaagtttgctagagagcatttggataatccagaagaagattgggagaatgtcatatggtcagatgaaaccaaatataactttttggtaaaaactcaactcgtcgtgtttggaggacaaagaatgctgagttgcatccaaagaacaccatacctactgtgaagcatgggggtggaaacatcatgctttggggctgtttttctgcaaagggaccaggacgactgatccgtgtaaaggaaagaatgaatgtggccaaatatcgtgagattttgagtgaaaacctccttccatcagcaagggcattgaagatgaaacgtggctgggtctttcagcatgacaatgatcccaaacacaccgcccgggcaacgaa

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU224963 lncRNA upstream 19286 87339982 ~ 87340238 (+) True G198728
TU224946 lncRNA upstream 33079 87325580 ~ 87326445 (+) True G198711
TU224945 lncRNA upstream 34021 87324493 ~ 87325503 (+) True G198710
TU224956 lncRNA upstream 39644 87319588 ~ 87319880 (+) True G198721
TU224952 lncRNA upstream 55264 87304061 ~ 87304260 (+) True G198717
TU224981 lncRNA downstream 10343 87370547 ~ 87372391 (+) True G198739
TU225025 lncRNA downstream 138090 87498294 ~ 87499092 (+) True G198782
TU225026 lncRNA downstream 139643 87499847 ~ 87500124 (+) True G198783
TU225063 lncRNA downstream 184175 87544379 ~ 87544579 (+) True G198820
TU225064 lncRNA downstream 184583 87544787 ~ 87545152 (+) True G198821
XM_036958231.1 mRNA upstream 5821 87351440 ~ 87353703 (+) True LOC118942948
XM_036958218.1 mRNA upstream 8325 87345598 ~ 87351199 (+) True LOC110498866
XR_005038646.1 mRNA upstream 17633 87340910 ~ 87341891 (+) True LOC118942946
XM_036934754.1 mRNA upstream 20967 87335797 ~ 87338557 (+) True LOC118937298
XM_021575520.2 mRNA upstream 35938 87288762 ~ 87323586 (+) False far1
XM_021575680.2 mRNA downstream 552328 87912532 ~ 87931639 (+) False LOC110498941
XM_021575688.2 mRNA downstream 558923 87919127 ~ 87931457 (+) True LOC110498941
XM_036990369.1 mRNA downstream 586269 87946473 ~ 87966277 (+) False wt-t1b
XM_036990367.1 mRNA downstream 586271 87946475 ~ 87966277 (+) False wt-t1b
XM_036990377.1 mRNA downstream 586272 87946476 ~ 87966277 (+) False wt-t1b
TU224773 other upstream 209034 87150202 ~ 87150490 (+) True G198575
TU224599 other upstream 320288 87037511 ~ 87039236 (+) True G198417
TU223067 other upstream 1222916 86135616 ~ 86136608 (+) True G197069
TU222039 other upstream 2339490 85010464 ~ 85020034 (+) True LOC110498034
TU220995 other upstream 2759200 84596410 ~ 84600324 (+) True G195155
TU225027 other downstream 133419 87493623 ~ 87496735 (+) True G198784
TU225054 other downstream 175732 87535936 ~ 87536928 (+) True G198811
TU225538 other downstream 506673 87866877 ~ 87867967 (+) True G199223
TU227536 other downstream 2059565 89419769 ~ 89422438 (+) True LOC110499234
TU228729 other downstream 3086914 90447118 ~ 90447573 (+) True G202039

Expression Profile


TU224978 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.5.
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TU224978 Expression in each Bioproject

Bar chart with 18 bars.
TU224978 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
End of interactive chart.