RNA id: TU225064


Basic Information

Item Value
RNA id TU225064
length 366
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G198821
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 87544787 ~ 87545152 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGATGCACAGTGTTtcatctgacacattggtgcggcaggctttcgggttaagtgggcattgtgtcaagaagcagtacggcttggtaggttgtgtttcggaggacgcacggctctccaccttcgcctctcccgagtccgtatgggagttgcagcaatgagacaagactgtaactaccaattggataccactaaaTTGGGGATAAAACAgggttaaataaaacaacagcCTTGGTTATCAGTGCTAACTTGTGGTGCTGGATTCAGGGAGTCCCGGCCATGTACATAGGCTGACAGTACTGTATGTGGCCTTCAGATTGCAGGCCTGCATAGGACAAAGGCAAAGTAGCTAGCGAGGTACTGCTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU225063 lncRNA upstream 208 87544379 ~ 87544579 (+) True G198820
TU225026 lncRNA upstream 44663 87499847 ~ 87500124 (+) True G198783
TU225025 lncRNA upstream 45695 87498294 ~ 87499092 (+) True G198782
TU224981 lncRNA upstream 172396 87370547 ~ 87372391 (+) True G198739
TU224978 lncRNA upstream 184583 87359524 ~ 87360204 (+) True G198737
TU225069 lncRNA downstream 9756 87554908 ~ 87555132 (+) True G198826
TU225082 lncRNA downstream 18367 87563519 ~ 87563739 (+) True G198839
TU225399 lncRNA downstream 162649 87707801 ~ 87708028 (+) True G199096
TU225416 lncRNA downstream 176470 87721622 ~ 87721918 (+) True G199113
TU225419 lncRNA downstream 181490 87726642 ~ 87726947 (+) True G199116
XM_036958231.1 mRNA upstream 191084 87351440 ~ 87353703 (+) True LOC118942948
XM_036958218.1 mRNA upstream 193588 87345598 ~ 87351199 (+) True LOC110498866
XR_005038646.1 mRNA upstream 202896 87340910 ~ 87341891 (+) True LOC118942946
XM_036934754.1 mRNA upstream 206230 87335797 ~ 87338557 (+) True LOC118937298
XM_021575528.2 mRNA upstream 221201 87288762 ~ 87323586 (+) True far1
XM_021575680.2 mRNA downstream 367380 87912532 ~ 87931639 (+) False LOC110498941
XM_021575688.2 mRNA downstream 373975 87919127 ~ 87931457 (+) True LOC110498941
XM_036990369.1 mRNA downstream 401321 87946473 ~ 87966277 (+) False wt-t1b
XM_036990367.1 mRNA downstream 401323 87946475 ~ 87966277 (+) False wt-t1b
XM_036990377.1 mRNA downstream 401324 87946476 ~ 87966277 (+) False wt-t1b
TU225054 other upstream 7859 87535936 ~ 87536928 (+) True G198811
TU225027 other upstream 48052 87493623 ~ 87496735 (+) True G198784
TU224773 other upstream 394297 87150202 ~ 87150490 (+) True G198575
TU224599 other upstream 505551 87037511 ~ 87039236 (+) True G198417
TU223067 other upstream 1408179 86135616 ~ 86136608 (+) True G197069
TU225538 other downstream 321725 87866877 ~ 87867967 (+) True G199223
TU227536 other downstream 1874617 89419769 ~ 89422438 (+) True LOC110499234
TU228729 other downstream 2901966 90447118 ~ 90447573 (+) True G202039
TU228879 other downstream 3171790 90716942 ~ 90717421 (+) True G202185
TU229614 other downstream 3691873 91237025 ~ 91237991 (+) False LOC110499641

Expression Profile