RNA id: TU225419


Basic Information

Item Value
RNA id TU225419
length 306
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G199116
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 87726642 ~ 87726947 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gctgcagtgtgtgcaaacctggtccagaactacaggaaacgtatgatctctgtaattgcaaacaaaggtttctgtaacaaatattaagttctgcttttctgatgtattaaataattatgtcatgcaataaaatgcaaattaattacttaaaaatcatacaatgtgattttctggattttagattccgtctctcacagttgaagtgtacctatgataaaaattacagacctctacatgctttgtaagtaggaaaacctgcaaaatcgtcagtatatcaaatacttgttctccccactgtatgtgtac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU225416 lncRNA upstream 4724 87721622 ~ 87721918 (+) True G199113
TU225399 lncRNA upstream 18614 87707801 ~ 87708028 (+) True G199096
TU225082 lncRNA upstream 162903 87563519 ~ 87563739 (+) True G198839
TU225069 lncRNA upstream 171510 87554908 ~ 87555132 (+) True G198826
TU225064 lncRNA upstream 181490 87544787 ~ 87545152 (+) True G198821
TU225420 lncRNA downstream 735 87727682 ~ 87727931 (+) True G199117
TU225424 lncRNA downstream 4398 87731345 ~ 87731670 (+) True G199119
TU225439 lncRNA downstream 25368 87752315 ~ 87752529 (+) True G199134
TU225443 lncRNA downstream 30317 87757264 ~ 87757669 (+) True G199138
TU225449 lncRNA downstream 35632 87762579 ~ 87762797 (+) True G199144
XM_036958231.1 mRNA upstream 372939 87351440 ~ 87353703 (+) True LOC118942948
XM_036958218.1 mRNA upstream 375443 87345598 ~ 87351199 (+) True LOC110498866
XR_005038646.1 mRNA upstream 384751 87340910 ~ 87341891 (+) True LOC118942946
XM_036934754.1 mRNA upstream 388085 87335797 ~ 87338557 (+) True LOC118937298
XM_021575528.2 mRNA upstream 403056 87288762 ~ 87323586 (+) True far1
XM_021575680.2 mRNA downstream 185585 87912532 ~ 87931639 (+) False LOC110498941
XM_021575688.2 mRNA downstream 192180 87919127 ~ 87931457 (+) True LOC110498941
XM_036990369.1 mRNA downstream 219526 87946473 ~ 87966277 (+) False wt-t1b
XM_036990367.1 mRNA downstream 219528 87946475 ~ 87966277 (+) False wt-t1b
XM_036990377.1 mRNA downstream 219529 87946476 ~ 87966277 (+) False wt-t1b
TU225054 other upstream 189714 87535936 ~ 87536928 (+) True G198811
TU225027 other upstream 229907 87493623 ~ 87496735 (+) True G198784
TU224773 other upstream 576152 87150202 ~ 87150490 (+) True G198575
TU224599 other upstream 687406 87037511 ~ 87039236 (+) True G198417
TU223067 other upstream 1590034 86135616 ~ 86136608 (+) True G197069
TU225538 other downstream 139930 87866877 ~ 87867967 (+) True G199223
TU227536 other downstream 1692822 89419769 ~ 89422438 (+) True LOC110499234
TU228729 other downstream 2720171 90447118 ~ 90447573 (+) True G202039
TU228879 other downstream 2989995 90716942 ~ 90717421 (+) True G202185
TU229614 other downstream 3510078 91237025 ~ 91237991 (+) False LOC110499641

Expression Profile