RNA id: TU225420


Basic Information

Item Value
RNA id TU225420
length 250
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G199117
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 87727682 ~ 87727931 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtgcagccgtcttcatcgacctggccaaggctttcgactctgtcaatcaccatattcttatcggcagactcagtagcctcggtttttctaatgactgccttgcctggttcaccaactactttgtagacagagttcagtgtgtcaaatcggagggcatgttgtccggtcctctggcagtctctatgggggtgccacagggttcaattctcgggccgactattttctctgtatatatcaatgatgttgctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU225419 lncRNA upstream 735 87726642 ~ 87726947 (+) True G199116
TU225416 lncRNA upstream 5764 87721622 ~ 87721918 (+) True G199113
TU225399 lncRNA upstream 19654 87707801 ~ 87708028 (+) True G199096
TU225082 lncRNA upstream 163943 87563519 ~ 87563739 (+) True G198839
TU225069 lncRNA upstream 172550 87554908 ~ 87555132 (+) True G198826
TU225424 lncRNA downstream 3414 87731345 ~ 87731670 (+) True G199119
TU225439 lncRNA downstream 24384 87752315 ~ 87752529 (+) True G199134
TU225443 lncRNA downstream 29333 87757264 ~ 87757669 (+) True G199138
TU225449 lncRNA downstream 34648 87762579 ~ 87762797 (+) True G199144
TU225480 lncRNA downstream 74144 87802075 ~ 87804686 (+) True G199174
XM_036958231.1 mRNA upstream 373979 87351440 ~ 87353703 (+) True LOC118942948
XM_036958218.1 mRNA upstream 376483 87345598 ~ 87351199 (+) True LOC110498866
XR_005038646.1 mRNA upstream 385791 87340910 ~ 87341891 (+) True LOC118942946
XM_036934754.1 mRNA upstream 389125 87335797 ~ 87338557 (+) True LOC118937298
XM_021575528.2 mRNA upstream 404096 87288762 ~ 87323586 (+) True far1
XM_021575680.2 mRNA downstream 184601 87912532 ~ 87931639 (+) False LOC110498941
XM_021575688.2 mRNA downstream 191196 87919127 ~ 87931457 (+) True LOC110498941
XM_036990369.1 mRNA downstream 218542 87946473 ~ 87966277 (+) False wt-t1b
XM_036990367.1 mRNA downstream 218544 87946475 ~ 87966277 (+) False wt-t1b
XM_036990377.1 mRNA downstream 218545 87946476 ~ 87966277 (+) False wt-t1b
TU225054 other upstream 190754 87535936 ~ 87536928 (+) True G198811
TU225027 other upstream 230947 87493623 ~ 87496735 (+) True G198784
TU224773 other upstream 577192 87150202 ~ 87150490 (+) True G198575
TU224599 other upstream 688446 87037511 ~ 87039236 (+) True G198417
TU223067 other upstream 1591074 86135616 ~ 86136608 (+) True G197069
TU225538 other downstream 138946 87866877 ~ 87867967 (+) True G199223
TU227536 other downstream 1691838 89419769 ~ 89422438 (+) True LOC110499234
TU228729 other downstream 2719187 90447118 ~ 90447573 (+) True G202039
TU228879 other downstream 2989011 90716942 ~ 90717421 (+) True G202185
TU229614 other downstream 3509094 91237025 ~ 91237991 (+) False LOC110499641

Expression Profile