RNA id: TU225664



Basic Information


Item Value
RNA id TU225664
length 236
lncRNA type intronic
GC content 0.46
exon number 2
gene id G199329
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 87828180 ~ 87831241 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtgttcgtcattgtctctgattgggaaccatatttaggtagcctgggtttcactgtgtgttggtgggtgattgttcctgtctatgtgttttcaccagataggctgtttaggttttcgttacgtttattgtttttgtagtgtttgtgtttagtgtgtttttttttcattaaacatgaatcgcaatcgacacgctgcattttggtccgactctccttctcaccaagaaaaccgttaca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU225599 lncRNA downstream 106612 87721060 ~ 87721568 (-) True G199267
TU225396 lncRNA downstream 122191 87705611 ~ 87705989 (-) True G199093
TU225395 lncRNA downstream 123089 87704868 ~ 87705091 (-) True G199092
TU225389 lncRNA downstream 129601 87698304 ~ 87698579 (-) True G199086
TU225361 lncRNA downstream 163865 87663786 ~ 87664315 (-) True G199063
TU225715 lncRNA upstream 87886 87919127 ~ 87931620 (-) True G199369
TU225727 lncRNA upstream 103134 87934375 ~ 87934585 (-) True G199378
TU225754 lncRNA upstream 129988 87961229 ~ 87961440 (-) True G199405
TU225755 lncRNA upstream 131037 87962278 ~ 87963033 (-) True G199406
TU225756 lncRNA upstream 135432 87966673 ~ 87967599 (-) True G199407
XM_036958288.1 mRNA downstream 138568 87565328 ~ 87689612 (-) True LOC110498902
XM_036958296.1 mRNA downstream 139933 87565328 ~ 87688247 (-) False LOC110498902
XM_021575590.2 mRNA downstream 284435 87518920 ~ 87543745 (-) True syt9b
XM_021575577.2 mRNA downstream 331435 87492601 ~ 87496745 (-) True olfml1
XR_005038648.1 mRNA downstream 335596 87367892 ~ 87492584 (-) True ppfibp2b
XM_036958353.1 mRNA upstream 28116 87859357 ~ 87900421 (-) False LOC110498926
XM_021575654.2 mRNA upstream 28117 87859358 ~ 87900421 (-) False LOC110498926
XM_036958341.1 mRNA upstream 28117 87859358 ~ 87900421 (-) False LOC110498926
XM_036958350.1 mRNA upstream 28117 87859358 ~ 87900425 (-) True LOC110498926
XM_021575668.2 mRNA upstream 76258 87907499 ~ 87911415 (-) True LOC110498933
TU225173 other downstream 501711 87322139 ~ 87326469 (-) True G198912
TU224521 other downstream 924224 86903036 ~ 86903956 (-) True G198342
TU223618 other downstream 1864515 85959845 ~ 85963665 (-) True G197554
TU223547 other downstream 1984687 85836299 ~ 85843493 (-) False G197498
TU228163 other upstream 1775596 89606837 ~ 89609890 (-) True LOC110499346
TU228979 other upstream 2546316 90377557 ~ 90441425 (-) True G202279
TU230773 other upstream 3757971 91589212 ~ 91591049 (-) True G203915
TU230896 other upstream 3955946 91787187 ~ 91788103 (-) True G204024
TU231426 other upstream 4566819 92398060 ~ 92439601 (-) False LOC110499897

Expression Profile