RNA id: TU226029


Basic Information

Item Value
RNA id TU226029
length 1912
lncRNA type sense_over
GC content 0.64
exon number 2
gene id G199648
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 88182505 ~ 88236263 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGTAAAGGGAGTGAGAATGTCCACTCACTGTTATAGTGCTCCCAAATAGGTCTGTTTTCTGAACATAATTGAAACCTTACAGATCAGATCTCATTCAGATCAGGGGTTTTATGCACGTCCAAAAAAAGGGACCTGCATGGTTAAAATAATGTGGGCCTGCCTCCAGTGCATAGATCAAACGGGATTGTCAGCTCACTGTTTAACTCCTCTCAAACTTTAATAACGCTTTGGTGATTTTAAGATTAATTTCCAAGCATTCTCAGGAGCCAAACCCTTTATCGACAGTCTTGACTACTTCGCGATTGCATTGGGCAGGACAAAAAAAGTACTTAATTGAGAGGAGGGAAGGCTATGCTTGGTTATTAACCAAATAAAACGAAATGGGGAaaaaacattttgtatttttgtttctcAATACGATGTATACAGGCACCAAAAGCACATCAGGCTACTCTTGTTCCATGTTCATATGGGCTGTGTTTCCGCTGTAAAAATGAATGCCATAACCAACTATGTTACTGCTAAAACCTGCTTTTGATTGGTCTTAACTATCCCTGTCAAAGCTGCCTGAAATTAGCACTTTGGatcatgtttttaaggacacacctaAAATATTTCCACCCCTCCCATCTGAGCGCAAGCGAGCTGATATAACACGGGTAAATTGCATAACCTGCCGTTGGGCCTGGAAAATGCTAGTGCGACAGTTTTTACATGAAGAAATTACAAACTATAATGCGTTTGAAACTTTTGATGCCTTAACACCAGCTGAAAATAGAGCCCTTAGTCTCTGGTAGACCTTGAAGTCCTATTGAGTAGACCCTGAAGTCCTATTGAGTAGACCCTGAAGTCCTATTGAGTAGACCCTGGAGTCCTATTGAGTAGACCCTGAAGTCCTATTGAGTAGACCCTGAAGTCCTGTTGAGTAGACCCTGGAGTCCTATTGAGGAGACCCTGGAGTCCTATTGAGGAGACCCTGGAGTCCTATTGAGGAGACCCTGAAGTCATATTGAGTAGACCCTGAAGTCTTATTGAGTAGACCCTGAAGTCTTATTGAGTAGACCCTGGAGTCCTATTGAGGAGACCCTGAAGTCCTATTGAGTAGACCCTGGAGTCCTATTGAGTAGACCCTGGAGTCCTATTGAGTAGACCCTGGAGTCCTATTGAGTAGACCCTGGAGTCCTATTGAGTAGACCCTGGAGTCCTATTGAGTAGACCCTGGAGTCCTATTGAGTAGACCCTGAAGTCCTATTGAGTAGACCCTGAAGTCCTATTGAGTAAAATAATCTGCACTTTGTTTGCACCCCCCTTCCATTGTGAAAAGCAAATGGCTCGGTAACTTGTTAGCTCTTAACTTTGTTTGCATGTAAATACATCTTTTTTTTCCTAGACTCAATGCGGTTACAAACGGCCTCCACACTTCACCACAGACCCCTCTAGTGAATGCCAACATTTTTGTCTTATTGTCCCTCAGCCCCAATGTTGGCAGATAGGAGAGGTTACAGCAATGGGACGGGGTCATGGGTTCATTAGGCTGTTCGCTAAAATCTATCCTTTTGTAACAGAAACAGCTTGAGCGGGGCAAACCACGCTTTTCACCAATATCCCACAGTCTGAACCAGGGCGAGACCTGCCAGTGGGCCAGCAACAGTCCAAACCTTAATCCACTGTGACATCAATTAGGAATAATCTCATCACTTTTAGAGATTGGGCTTGTCAAAACTTTAATTAAGTTCTCTCGGTGTCTCTCCTATAGTGCAGACAAGATCAACAACACATTATGGTATAGTGATGGACTTTAGAATCCCAGAGGCGATTTGTGTGGATGTCACTTTTAACCTGGTGTGAACTTGGGTCTCTGGAGAAATCTTCTATATTAGTTTACAGTTGGAAAATGTATATGTTCAGCTC

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU226035 lncRNA downstream 66341 88115664 ~ 88116164 (-) False G199654
TU226036 lncRNA downstream 66341 88115664 ~ 88116164 (-) True G199654
TU226006 lncRNA downstream 114258 88064093 ~ 88068247 (-) True G199627
TU226007 lncRNA downstream 116989 88061024 ~ 88065516 (-) False G199627
TU225765 lncRNA downstream 204757 87977417 ~ 87977748 (-) True G199416
TU226157 lncRNA upstream 50866 88287129 ~ 88287365 (-) True G199774
TU226335 lncRNA upstream 59651 88295914 ~ 88296128 (-) True G199935
TU226348 lncRNA upstream 85820 88322083 ~ 88322653 (-) True G199947
TU226349 lncRNA upstream 86558 88322821 ~ 88323081 (-) True G199948
TU226446 lncRNA upstream 239800 88476063 ~ 88476326 (-) True G200039
XM_021575668.2 mRNA downstream 271090 87907499 ~ 87911415 (-) True LOC110498933
XM_036958350.1 mRNA downstream 282080 87859358 ~ 87900425 (-) True LOC110498926
XM_036958353.1 mRNA downstream 282084 87859357 ~ 87900421 (-) False LOC110498926
XM_021575949.2 mRNA upstream 333088 88569351 ~ 88574203 (-) True LOC110499068
XM_021575980.2 mRNA upstream 394216 88630479 ~ 88642157 (-) False LOC110499075
XM_021575988.2 mRNA upstream 394216 88630479 ~ 88642294 (-) False LOC110499075
XM_021575995.2 mRNA upstream 394216 88630479 ~ 88644229 (-) False LOC110499075
XM_021576004.2 mRNA upstream 394216 88630479 ~ 88644229 (-) False LOC110499075
TU225173 other downstream 856036 87322139 ~ 87326469 (-) True G198912
TU224521 other downstream 1278549 86903036 ~ 86903956 (-) True G198342
TU223618 other downstream 2218840 85959845 ~ 85963665 (-) True G197554
TU223547 other downstream 2339012 85836299 ~ 85843493 (-) False G197498
TU228163 other upstream 1370574 89606837 ~ 89609890 (-) True LOC110499346
TU228979 other upstream 2141294 90377557 ~ 90441425 (-) True G202279
TU230773 other upstream 3352949 91589212 ~ 91591049 (-) True G203915
TU230896 other upstream 3550924 91787187 ~ 91788103 (-) True G204024
TU231426 other upstream 4161797 92398060 ~ 92439601 (-) False LOC110499897

Expression Profile