RNA id: TU226185


Basic Information

Item Value
RNA id TU226185
length 225
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G199800
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 88323695 ~ 88323919 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCCCTACACAGTATAGACAGGATGTATACATTGACAAGGGTATAAGTATTAATGTAGATACCACAATGTGTCAAACCAGATCAACATTCCAGGTTAATGGCCTTGGTGATACTGTAGTCGTTCTAAGAGGAAACTTCCCCCTGAAGCAAAGTTTACATATAAACCAATAGACAGAGTGCaaaggagagacacatggaggatgaggaagtgatagaCATATGTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU226184 lncRNA upstream 113 88323293 ~ 88323582 (+) True G199799
TU226176 lncRNA upstream 9749 88313487 ~ 88313946 (+) True G199791
TU226175 lncRNA upstream 10701 88312763 ~ 88312994 (+) True G199790
TU226171 lncRNA upstream 24106 88298406 ~ 88299589 (+) True G199788
TU226170 lncRNA upstream 26593 88296837 ~ 88297102 (+) True G199787
TU226193 lncRNA downstream 22158 88346077 ~ 88346415 (+) True G199808
TU226161 lncRNA downstream 39473 88363392 ~ 88389493 (+) True mpped2
TU226268 lncRNA downstream 105940 88429859 ~ 88430196 (+) True G199870
TU226269 lncRNA downstream 106376 88430295 ~ 88430609 (+) True G199871
TU226282 lncRNA downstream 138672 88462591 ~ 88474033 (+) True G199883
XM_036958464.1 mRNA upstream 252800 88053178 ~ 88070895 (+) False LOC110498955
XM_021575859.2 mRNA downstream 39392 88363311 ~ 88389495 (+) False mpped2
XM_036958475.1 mRNA downstream 39790 88363709 ~ 88389495 (+) False mpped2
XM_036958477.1 mRNA downstream 74718 88398637 ~ 88567065 (+) False LOC110499041
XM_036958478.1 mRNA downstream 74718 88398637 ~ 88567065 (+) False LOC110499041
XM_036958479.1 mRNA downstream 74718 88398637 ~ 88567065 (+) False LOC110499041
TU225538 other upstream 455728 87866877 ~ 87867967 (+) True G199223
TU225054 other upstream 786767 87535936 ~ 87536928 (+) True G198811
TU225027 other upstream 826960 87493623 ~ 87496735 (+) True G198784
TU224773 other upstream 1173205 87150202 ~ 87150490 (+) True G198575
TU224599 other upstream 1284459 87037511 ~ 87039236 (+) True G198417
TU227536 other downstream 1095850 89419769 ~ 89422438 (+) True LOC110499234
TU228729 other downstream 2123199 90447118 ~ 90447573 (+) True G202039
TU228879 other downstream 2393023 90716942 ~ 90717421 (+) True G202185
TU229614 other downstream 2913106 91237025 ~ 91237991 (+) False LOC110499641
TU230045 other downstream 3042418 91366337 ~ 91539373 (+) True mgat4c

Expression Profile