RNA id: TU226193



Basic Information


Item Value
RNA id TU226193
length 339
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G199808
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 88346077 ~ 88346415 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ACCAGGTTGTTACTGAAATACGTATGATAGTAGCCTTGTGTTTTTTATTGTTATTAATGCCAATGCTGTTTTCTAGGCTTGTTTTCACTTAATACTTTGGGATATTAATTTGTCAAGTTTGGAGAAACAGAAGTCTGTTTGGTTTAAATTCCCTAGGTGCAACTGCATGGTATTTGCAACTATAACGAGTCTGGGCTATGATCAATTAAGCCATATCAATGCAGTTAAACAGgttaatgtaaaataatgaattgtGTTGGCTTACACTTATGGCACTTCCAAGGGCGTTTCATGATGATTATTACAGTCCTGTCAATCATGTTATTTGCAGTATTTAGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU226185 lncRNA upstream 22158 88323695 ~ 88323919 (+) True G199800
TU226184 lncRNA upstream 22495 88323293 ~ 88323582 (+) True G199799
TU226176 lncRNA upstream 32131 88313487 ~ 88313946 (+) True G199791
TU226175 lncRNA upstream 33083 88312763 ~ 88312994 (+) True G199790
TU226171 lncRNA upstream 46488 88298406 ~ 88299589 (+) True G199788
TU226161 lncRNA downstream 16977 88363392 ~ 88389493 (+) True mpped2
TU226268 lncRNA downstream 83444 88429859 ~ 88430196 (+) True G199870
TU226269 lncRNA downstream 83880 88430295 ~ 88430609 (+) True G199871
TU226282 lncRNA downstream 116176 88462591 ~ 88474033 (+) True G199883
TU226290 lncRNA downstream 128081 88474496 ~ 88474706 (+) True G199891
XM_036958464.1 mRNA upstream 275182 88053178 ~ 88070895 (+) False LOC110498955
XM_021575859.2 mRNA downstream 16896 88363311 ~ 88389495 (+) False mpped2
XM_036958475.1 mRNA downstream 17294 88363709 ~ 88389495 (+) False mpped2
XM_036958477.1 mRNA downstream 52222 88398637 ~ 88567065 (+) False LOC110499041
XM_036958478.1 mRNA downstream 52222 88398637 ~ 88567065 (+) False LOC110499041
XM_036958479.1 mRNA downstream 52222 88398637 ~ 88567065 (+) False LOC110499041
TU225538 other upstream 478110 87866877 ~ 87867967 (+) True G199223
TU225054 other upstream 809149 87535936 ~ 87536928 (+) True G198811
TU225027 other upstream 849342 87493623 ~ 87496735 (+) True G198784
TU224773 other upstream 1195587 87150202 ~ 87150490 (+) True G198575
TU224599 other upstream 1306841 87037511 ~ 87039236 (+) True G198417
TU227536 other downstream 1073354 89419769 ~ 89422438 (+) True LOC110499234
TU228729 other downstream 2100703 90447118 ~ 90447573 (+) True G202039
TU228879 other downstream 2370527 90716942 ~ 90717421 (+) True G202185
TU229614 other downstream 2890610 91237025 ~ 91237991 (+) False LOC110499641
TU230045 other downstream 3019922 91366337 ~ 91539373 (+) True mgat4c

Expression Profile