RNA id: TU226579


Basic Information

Item Value
RNA id TU226579
length 1901
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id G200162
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 88630484 ~ 88632486 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTATCTCTTTATTGTCATATAAAAACAAATTTCCCGATCATACATGTACAGTTGAGTGACATTTATGCTGCATTCAGACAATTAACCAATTCTAGGATGAAAGTTTGTCATAGTCGCCACATGATTACAGTTCACCTTTTTGTCAATGCTTTTTGTCCATGATATGATGCCCACATAAGAGAAGCATTCAACATTATAGAAAGTGCTCCGTAGTTAACACCTTACCAAAGTTGTATAATAGAAAACACCACTCGCTCTCATACCCAGCTACGAACTTAGTAACTTCTTTAAATGTGAGTCCCTTCACCTGATAGAACACAATAATATCCCTTCTACCATTTATGTACTGTAATTCAAATAGAAAGAcaagaacaacaaaaaaatggctaTGCTCTCGGATTGGCTTTCATTCTGGCGTGAGAACTCTTGTATTGGCACAGTTGGTAGTATTTTTTGAACAGGACCTGGGAGTGGCAGTGTACAGGCAGTGTCCCTCTGGCTCTCATGTTCAAATACAAAACTGGTTTTCTAGTTGAACATGAGAAAATTAGGTAGCGAGTAAGTTCTGCTTTCTCAAAGATAAAAAAACCTGCATGCAAATGAGGTATGGTGCTGTTAGCTTGGCTTGATGTGGTGTAGCTTagtgtaacttgcTCTAAAAAAAATGTCTGTTCTCCTAATTTTACATTATCATAAAGTGCACACattcaacttaataaaaaacacattttcccatctcaaggtatttttttttttactagagcctattaagtgccaaataaagtaacagggttgactgtagcagggttgacgatttcatcttaAAATCAGCAATAAATCCCCATGTGAGAGTGGGAATAGAAGCTTGTGtacaacagggaggggcaattgaatgcaagcttctatctgtatatctatgggtaacagggttgacgtgttatgcttGACCTTCTCAGTTTTCTGCCACTAAACACCAGCAAATGGCCAagaagagtagaaccagctcacctgcttttacactatgatttgactattagattttcaatgtttcttttgaaaaaacTATAAAGGAATGGTTTCAATATATTAAAACAGAATTTCAGTTCACGTAACATGGTTGACGTTAAAATGAGGGACTGATGTAAATAAATCACTAATCAGATTAAATTAATAATCATTTttagaaatgactttgtcaaagctacaaaataactagggctttaccatgatggtgaaaacttgagacatttaaGGGTTAAATGGGTTGAATCTTCCGAGAAGTCACAGAAGGTGCATGttgggacatgtcaaaatgctgagtTTTCGCACTTTAGCAAGTCTTCGTTCAAGTAAAAAATCggattgaattctccatgtggtctatattaaaagtCACTATTTAATATAAAAGgctttaaaattcaatattggtctACAATTTCTACATAAAATAACAAAGGGAGGCAAAAGGCACTAATTTCATGGAACGACCCAGTACAGTATTTGGCTGTGGTTTAGAGCTGAAATAGAGAGACTAAAGTTCACATTATCTCCTGACCCAAACCATACAGTGCTGTCTCAGATACTATCTTTTCACATTGACCTTTCCAGCATGGTTCTAGCAACTACTGTGCAGTGAATGTGTAACCACTGACACGGCAAGCACTGTACGGCTCAGCTTGGTTATGCCTGGCTCAGCTCTGTAGTGTGAAAAGGGTCTCTCTGCTGTGGTCACTCTACCTGGGTTCCGCTGGCCTCGGTCTTTACGGCCTCCACCAGGAAGCTGAGCTCATTGCACAGAGTCTCGTGGCGGTAGGCCATGCGGATCTGAGCCACGTTGGTCCGTCTGATGTCATTTCCCTCCGGCCCGTCCTGCAGGTAGTTGGGCCCCAGGAAGTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU226562 lncRNA upstream 23439 88606630 ~ 88607045 (+) True G200146
TU226533 lncRNA upstream 44580 88585661 ~ 88585904 (+) True G200117
TU226290 lncRNA upstream 155778 88474496 ~ 88474706 (+) True G199891
TU226282 lncRNA upstream 156451 88462591 ~ 88474033 (+) True G199883
TU226269 lncRNA upstream 199875 88430295 ~ 88430609 (+) True G199871
TU226636 lncRNA downstream 96886 88729372 ~ 88729663 (+) True G200218
TU226637 lncRNA downstream 97740 88730226 ~ 88730445 (+) True G200219
TU226768 lncRNA downstream 146478 88778964 ~ 88781586 (+) True G200331
TU226773 lncRNA downstream 151776 88784262 ~ 88784585 (+) True G200335
TU226789 lncRNA downstream 175359 88807845 ~ 88808071 (+) True G200351
XM_021576018.2 mRNA upstream 127 88623369 ~ 88630357 (+) True LOC110499106
XM_036958478.1 mRNA upstream 63419 88398637 ~ 88567065 (+) False LOC110499041
XM_021576031.2 mRNA downstream 29427 88661913 ~ 88667515 (+) True LOC110499113
XM_036958483.1 mRNA downstream 58941 88691427 ~ 88726701 (+) True LOC110499119
XM_021576065.2 mRNA downstream 106409 88738895 ~ 88750469 (+) False bmt2
XM_021576075.2 mRNA downstream 112756 88745242 ~ 88750469 (+) True bmt2
XM_021576056.2 mRNA downstream 118282 88750768 ~ 88758734 (+) True tmem168b
TU225538 other upstream 762517 87866877 ~ 87867967 (+) True G199223
TU225054 other upstream 1093556 87535936 ~ 87536928 (+) True G198811
TU225027 other upstream 1133749 87493623 ~ 87496735 (+) True G198784
TU224773 other upstream 1479994 87150202 ~ 87150490 (+) True G198575
TU224599 other upstream 1591248 87037511 ~ 87039236 (+) True G198417
TU227536 other downstream 787283 89419769 ~ 89422438 (+) True LOC110499234
TU228729 other downstream 1814632 90447118 ~ 90447573 (+) True G202039
TU228879 other downstream 2084456 90716942 ~ 90717421 (+) True G202185
TU229614 other downstream 2604539 91237025 ~ 91237991 (+) False LOC110499641
TU230045 other downstream 2733851 91366337 ~ 91539373 (+) True mgat4c

Expression Profile