RNA id: TU226773


Basic Information

Item Value
RNA id TU226773
length 324
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G200335
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 88784262 ~ 88784585 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgttggttaggccagggtgtgacatgggtgatttatgtgtcttgttttgtctaggggttttgtagtctatggggttgtgttcagttgagtgttctaggtaagtctatggttgcctggagtggttctcaatcagaggcaggtgtttatcgttgtctctgattgggaaccatatttaggcagccatattctttaggtattttgtgggtgattgtctcctgtgtcagtgtttgtgccacacaggactgtttTCGGGTTtttacgtttcttgttttgtattctgttcatgtatagtttctctgattaaagaaccatgaactttaacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU226768 lncRNA upstream 2676 88778964 ~ 88781586 (+) True G200331
TU226637 lncRNA upstream 53817 88730226 ~ 88730445 (+) True G200219
TU226636 lncRNA upstream 54599 88729372 ~ 88729663 (+) True G200218
TU226579 lncRNA upstream 151776 88630484 ~ 88632486 (+) True G200162
TU226562 lncRNA upstream 177217 88606630 ~ 88607045 (+) True G200146
TU226789 lncRNA downstream 23260 88807845 ~ 88808071 (+) True G200351
TU226814 lncRNA downstream 58799 88843384 ~ 88843605 (+) True G200372
TU226903 lncRNA downstream 204351 88988936 ~ 89041767 (+) True G200457
TU227120 lncRNA downstream 259436 89044021 ~ 89044998 (+) True G200651
TU227121 lncRNA downstream 261799 89046384 ~ 89048885 (+) True G200652
XM_021576056.2 mRNA upstream 25528 88750768 ~ 88758734 (+) True tmem168b
XM_021576065.2 mRNA upstream 33793 88738895 ~ 88750469 (+) False bmt2
XM_021576075.2 mRNA upstream 33793 88745242 ~ 88750469 (+) True bmt2
XM_036958483.1 mRNA upstream 57561 88691427 ~ 88726701 (+) True LOC110499119
XM_021576031.2 mRNA upstream 116747 88661913 ~ 88667515 (+) True LOC110499113
XM_036934382.1 mRNA downstream 31218 88815803 ~ 88980439 (+) True LOC110502274
XM_036958486.1 mRNA downstream 348348 89132933 ~ 89162092 (+) False tdrd12
XM_036958487.1 mRNA downstream 383729 89168314 ~ 89202963 (+) False ankrd27
XM_036958488.1 mRNA downstream 383729 89168314 ~ 89202963 (+) False ankrd27
XM_036958489.1 mRNA downstream 383729 89168314 ~ 89202963 (+) False ankrd27
TU225538 other upstream 916295 87866877 ~ 87867967 (+) True G199223
TU225054 other upstream 1247334 87535936 ~ 87536928 (+) True G198811
TU225027 other upstream 1287527 87493623 ~ 87496735 (+) True G198784
TU224773 other upstream 1633772 87150202 ~ 87150490 (+) True G198575
TU224599 other upstream 1745026 87037511 ~ 87039236 (+) True G198417
TU227536 other downstream 635184 89419769 ~ 89422438 (+) True LOC110499234
TU228729 other downstream 1662533 90447118 ~ 90447573 (+) True G202039
TU228879 other downstream 1932357 90716942 ~ 90717421 (+) True G202185
TU229614 other downstream 2452440 91237025 ~ 91237991 (+) False LOC110499641
TU230045 other downstream 2581752 91366337 ~ 91539373 (+) True mgat4c

Expression Profile