RNA id: TU227120


Basic Information

Item Value
RNA id TU227120
length 978
lncRNA type inter_gene
GC content 0.56
exon number 1
gene id G200651
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 89044021 ~ 89044998 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcagcgggagggagggagagatgcaaACTAGATAGGAGCAGCAATCGGGGAAAATATAAGCAATATTCTAAGTGAGATATTTGCTGAGAACCAGTTCAGTGCTCACAGTGACTACATACTATGGTCACTCAACCCAATCCAAGCCAAAAGGTACACACAGTAACAGAGTGCGCCTACTAGATAAGAatcatacagtaccttcagaaagtattcccaccccttgactttttgttgtgttacaacctgaatttaaaatggattaaatcaatattttgtcactggcctacacacaataccacataatatcaaagtggaattcatttattttttacaaatgaataaaaaatgaaaatttgaaatgtcttgagttaataagtattcaacacctttgttatggaaagcctaaaaaAGTTCAGGAggggaaaaaaattaaataaaattggCTTAACAAGTAACATAATAGGGTTAATCGaccgtgtgcaataatagtgtaacattatttatgactacctcatctctgtaccctgcacacacaattatctgtaagatccctcagtcgagcagtgactttcaaacacagattcaaccacaaataccAGTTTTTTTCAATACCTCACACatacttatatctccctcactaactttaagcatcagctgtcaaagcagcttaccgatcactgtaacCTGAACACAGCCAAACTTCATCtccatattatttattttttgcacccagtatctctacttgcacatcatctgcacatctatcactccagtgttaatgctaaattgtaattatttctccTCAATTGCCTTacttccctaatcttactacatttgcacacattgtacatagacttttctattgtgttatttactgtacgtttgtttatcccatgagtaaatgttgtttttgtcacactgcttggCTTCAtattggctaggtcgcagttgtaaatgagaacttgttctcaactgtcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU226903 lncRNA upstream 2254 88988936 ~ 89041767 (+) True G200457
TU226814 lncRNA upstream 200416 88843384 ~ 88843605 (+) True G200372
TU226789 lncRNA upstream 235950 88807845 ~ 88808071 (+) True G200351
TU226773 lncRNA upstream 259436 88784262 ~ 88784585 (+) True G200335
TU226768 lncRNA upstream 262435 88778964 ~ 88781586 (+) True G200331
TU227121 lncRNA downstream 1386 89046384 ~ 89048885 (+) True G200652
TU227122 lncRNA downstream 4352 89049350 ~ 89049561 (+) True G200653
TU227138 lncRNA downstream 26538 89071536 ~ 89071845 (+) True G200668
TU227139 lncRNA downstream 27002 89072000 ~ 89072369 (+) True G200669
TU227140 lncRNA downstream 28801 89073799 ~ 89074036 (+) True G200670
XM_036934382.1 mRNA upstream 63582 88815803 ~ 88980439 (+) True LOC110502274
XM_021576056.2 mRNA upstream 285287 88750768 ~ 88758734 (+) True tmem168b
XM_021576065.2 mRNA upstream 293552 88738895 ~ 88750469 (+) False bmt2
XM_021576075.2 mRNA upstream 293552 88745242 ~ 88750469 (+) True bmt2
XM_036958483.1 mRNA upstream 317320 88691427 ~ 88726701 (+) True LOC110499119
XM_036958486.1 mRNA downstream 87935 89132933 ~ 89162092 (+) False tdrd12
XM_036958487.1 mRNA downstream 123316 89168314 ~ 89202963 (+) False ankrd27
XM_036958488.1 mRNA downstream 123316 89168314 ~ 89202963 (+) False ankrd27
XM_036958489.1 mRNA downstream 123316 89168314 ~ 89202963 (+) False ankrd27
XM_036958490.1 mRNA downstream 123316 89168314 ~ 89202963 (+) False ankrd27
TU225538 other upstream 1176054 87866877 ~ 87867967 (+) True G199223
TU225054 other upstream 1507093 87535936 ~ 87536928 (+) True G198811
TU225027 other upstream 1547286 87493623 ~ 87496735 (+) True G198784
TU224773 other upstream 1893531 87150202 ~ 87150490 (+) True G198575
TU224599 other upstream 2004785 87037511 ~ 87039236 (+) True G198417
TU227536 other downstream 374771 89419769 ~ 89422438 (+) True LOC110499234
TU228729 other downstream 1402120 90447118 ~ 90447573 (+) True G202039
TU228879 other downstream 1671944 90716942 ~ 90717421 (+) True G202185
TU229614 other downstream 2192027 91237025 ~ 91237991 (+) False LOC110499641
TU230045 other downstream 2321339 91366337 ~ 91539373 (+) True mgat4c

Expression Profile