RNA id: TU227140


Basic Information

Item Value
RNA id TU227140
length 238
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G200670
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 89073799 ~ 89074036 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccacagggttcaattctcgggccgactcttttctctgtatgtattaatgatgtcgctcttgctgctggtgattctctgattcacctctacgcaaacgacaccattctgtatacatctggcccttctttggacactgtgttaacaaatctccaaacgagcttcaatgccatacaactctccttccgtggcctccaactgcttttaaatgctagttaaactaaatgcatgctcttcaacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227139 lncRNA upstream 1430 89072000 ~ 89072369 (+) True G200669
TU227138 lncRNA upstream 1954 89071536 ~ 89071845 (+) True G200668
TU227122 lncRNA upstream 24238 89049350 ~ 89049561 (+) True G200653
TU227121 lncRNA upstream 24914 89046384 ~ 89048885 (+) True G200652
TU227120 lncRNA upstream 28801 89044021 ~ 89044998 (+) True G200651
TU227141 lncRNA downstream 407 89074443 ~ 89074724 (+) True G200671
TU227142 lncRNA downstream 1326 89075362 ~ 89075569 (+) True G200672
TU227154 lncRNA downstream 14629 89088665 ~ 89092313 (+) True G200678
TU227163 lncRNA downstream 25623 89099659 ~ 89100034 (+) True G200685
TU227260 lncRNA downstream 73548 89147584 ~ 89148112 (+) True tdrd12
XM_036934382.1 mRNA upstream 93360 88815803 ~ 88980439 (+) True LOC110502274
XM_021576056.2 mRNA upstream 315065 88750768 ~ 88758734 (+) True tmem168b
XM_021576065.2 mRNA upstream 323330 88738895 ~ 88750469 (+) False bmt2
XM_021576075.2 mRNA upstream 323330 88745242 ~ 88750469 (+) True bmt2
XM_036958483.1 mRNA upstream 347098 88691427 ~ 88726701 (+) True LOC110499119
XM_036958486.1 mRNA downstream 58897 89132933 ~ 89162092 (+) False tdrd12
XM_036958487.1 mRNA downstream 94278 89168314 ~ 89202963 (+) False ankrd27
XM_036958488.1 mRNA downstream 94278 89168314 ~ 89202963 (+) False ankrd27
XM_036958489.1 mRNA downstream 94278 89168314 ~ 89202963 (+) False ankrd27
XM_036958490.1 mRNA downstream 94278 89168314 ~ 89202963 (+) False ankrd27
TU225538 other upstream 1205832 87866877 ~ 87867967 (+) True G199223
TU225054 other upstream 1536871 87535936 ~ 87536928 (+) True G198811
TU225027 other upstream 1577064 87493623 ~ 87496735 (+) True G198784
TU224773 other upstream 1923309 87150202 ~ 87150490 (+) True G198575
TU224599 other upstream 2034563 87037511 ~ 87039236 (+) True G198417
TU227536 other downstream 345733 89419769 ~ 89422438 (+) True LOC110499234
TU228729 other downstream 1373082 90447118 ~ 90447573 (+) True G202039
TU228879 other downstream 1642906 90716942 ~ 90717421 (+) True G202185
TU229614 other downstream 2162989 91237025 ~ 91237991 (+) False LOC110499641
TU230045 other downstream 2292301 91366337 ~ 91539373 (+) True mgat4c

Expression Profile