RNA id: TU227154


Basic Information

Item Value
RNA id TU227154
length 306
lncRNA type antisense_over
GC content 0.53
exon number 2
gene id G200678
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 89088665 ~ 89092313 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCACTCCACAGGAATAGAGGCAGCTTGCAGACACATGACCTTTCCACTGGGCTGAGGGATATACACACGGAATGCCACTCGCACACGCGTGTTCTTCCTCCCGatgtctgtctcccccttcctgaGCTCAATGTCAGAGTTCCTCAGCTTCAAGATGCCTGCACAGTCAATACTGGCAAGCAGTAGCCACCGTTTTCCCTGTTACTCTGTGCACCTGGTAGAAGGCATGCGGTCTCAAGTAGCGATCGTCTGCCGTTCCAATGAAAATCTGCAGGTTGACTGGCTTCTCGTTGTATCCAATGAGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227142 lncRNA upstream 13096 89075362 ~ 89075569 (+) True G200672
TU227141 lncRNA upstream 13941 89074443 ~ 89074724 (+) True G200671
TU227140 lncRNA upstream 14629 89073799 ~ 89074036 (+) True G200670
TU227139 lncRNA upstream 16296 89072000 ~ 89072369 (+) True G200669
TU227138 lncRNA upstream 16820 89071536 ~ 89071845 (+) True G200668
TU227163 lncRNA downstream 7346 89099659 ~ 89100034 (+) True G200685
TU227260 lncRNA downstream 55271 89147584 ~ 89148112 (+) True tdrd12
TU227448 lncRNA downstream 200267 89292580 ~ 89292872 (+) True G200928
TU227465 lncRNA downstream 217840 89310153 ~ 89310659 (+) True G200945
TU227569 lncRNA downstream 335396 89427709 ~ 89427934 (+) True G201044
XM_036934382.1 mRNA upstream 108226 88815803 ~ 88980439 (+) True LOC110502274
XM_021576056.2 mRNA upstream 329931 88750768 ~ 88758734 (+) True tmem168b
XM_021576065.2 mRNA upstream 338196 88738895 ~ 88750469 (+) False bmt2
XM_021576075.2 mRNA upstream 338196 88745242 ~ 88750469 (+) True bmt2
XM_036958483.1 mRNA upstream 361964 88691427 ~ 88726701 (+) True LOC110499119
XM_036958486.1 mRNA downstream 40620 89132933 ~ 89162092 (+) False tdrd12
XM_036958487.1 mRNA downstream 76001 89168314 ~ 89202963 (+) False ankrd27
XM_036958488.1 mRNA downstream 76001 89168314 ~ 89202963 (+) False ankrd27
XM_036958489.1 mRNA downstream 76001 89168314 ~ 89202963 (+) False ankrd27
XM_036958490.1 mRNA downstream 76001 89168314 ~ 89202963 (+) False ankrd27
TU225538 other upstream 1220698 87866877 ~ 87867967 (+) True G199223
TU225054 other upstream 1551737 87535936 ~ 87536928 (+) True G198811
TU225027 other upstream 1591930 87493623 ~ 87496735 (+) True G198784
TU224773 other upstream 1938175 87150202 ~ 87150490 (+) True G198575
TU224599 other upstream 2049429 87037511 ~ 87039236 (+) True G198417
TU227536 other downstream 327456 89419769 ~ 89422438 (+) True LOC110499234
TU228729 other downstream 1354805 90447118 ~ 90447573 (+) True G202039
TU228879 other downstream 1624629 90716942 ~ 90717421 (+) True G202185
TU229614 other downstream 2144712 91237025 ~ 91237991 (+) False LOC110499641
TU230045 other downstream 2274024 91366337 ~ 91539373 (+) True mgat4c

Expression Profile