RNA id: TU227596


Basic Information

Item Value
RNA id TU227596
length 247
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G201068
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 89453149 ~ 89453395 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACTCCTTCATTACAGTTGTAGTGTTGGTAGATGCGTGAGTGGAAGTAGGTAGAACACACATTTTCTGGCTTATATAGTGTTGAAGTGTTGAAtaaaaagtgttgacagtgctgagtaagaacttaaacatgaactcactcataaaaacagcatctctttgctgtattcgttgacagtctctctctggtcatggttttaaaagttttcaaatctcacagtatcaacctTTTTTTACGCCTGCTACGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227589 lncRNA upstream 10436 89442462 ~ 89442713 (+) True G201061
TU227578 lncRNA upstream 22731 89430141 ~ 89430418 (+) True G201050
TU227569 lncRNA upstream 25215 89427709 ~ 89427934 (+) True G201044
TU227465 lncRNA upstream 142490 89310153 ~ 89310659 (+) True G200945
TU227448 lncRNA upstream 160277 89292580 ~ 89292872 (+) True G200928
TU227599 lncRNA downstream 5467 89458862 ~ 89459088 (+) True G201071
TU227566 lncRNA downstream 19144 89472539 ~ 89473610 (+) True G201041
TU227565 lncRNA downstream 22595 89475990 ~ 89476606 (+) True G201040
TU227573 lncRNA downstream 53232 89506627 ~ 89508008 (+) True G201045
TU227609 lncRNA downstream 76354 89529749 ~ 89530222 (+) True G201081
XM_021576243.2 mRNA upstream 30711 89395057 ~ 89422438 (+) False LOC110499234
XM_036958492.1 mRNA upstream 250186 89168314 ~ 89202963 (+) False ankrd27
XM_021576253.2 mRNA downstream 16984 89470379 ~ 89472518 (+) True snx20
XM_021576322.2 mRNA downstream 47117 89500512 ~ 89502349 (+) True mphosph6
XM_036958500.1 mRNA downstream 102178 89555573 ~ 89577445 (+) False LOC110499288
XM_036958498.1 mRNA downstream 102179 89555574 ~ 89577445 (+) True LOC110499288
XM_021576456.2 mRNA downstream 275545 89728940 ~ 89740218 (+) False LOC110499364
TU227536 other upstream 30711 89419769 ~ 89422438 (+) True LOC110499234
TU225538 other upstream 1585182 87866877 ~ 87867967 (+) True G199223
TU225054 other upstream 1916221 87535936 ~ 87536928 (+) True G198811
TU225027 other upstream 1956414 87493623 ~ 87496735 (+) True G198784
TU224773 other upstream 2302659 87150202 ~ 87150490 (+) True G198575
TU228729 other downstream 993723 90447118 ~ 90447573 (+) True G202039
TU228879 other downstream 1263547 90716942 ~ 90717421 (+) True G202185
TU229614 other downstream 1783630 91237025 ~ 91237991 (+) False LOC110499641
TU230045 other downstream 1912942 91366337 ~ 91539373 (+) True mgat4c
TU230224 other downstream 2168606 91622001 ~ 91624293 (+) True G203414

Expression Profile