RNA id: TU227611



Basic Information


Item Value
RNA id TU227611
length 478
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G201083
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 89530886 ~ 89531363 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ctctggtgagactgaccagagagagcgGACACTGTATTCCACCTGATGACGAAACTCCATATTACAagagaaagttaaatattcctcaatattaaacagacatgaggggctgctaataataataataaaaacacagGGCTATTGATAAATgtggctactcattcattgcagcagGAGTGGAAGGCAGAGTCGGTCTTTTAAGACAAattaaatggttcaaaatgggaaaacTTTGCCAACCCAGTGCACCAAAAGCACAACACTaataatgcaggcaaacttaaatctgtttttacctcatttctaccagcaagTCACAtctgcaaccagaggaaaaaataaataaactctagaccacctttactccacacagacacctacaaagctctccctccctccatttggaaaatctgaccataattctatcctcctgattactgcttacaagccaaaactaaagcaggaagtaccagtgacc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU227610 lncRNA upstream 120 89530491 ~ 89530766 (+) True G201082
TU227609 lncRNA upstream 664 89529749 ~ 89530222 (+) True G201081
TU227573 lncRNA upstream 22878 89506627 ~ 89508008 (+) True G201045
TU227565 lncRNA upstream 54280 89475990 ~ 89476606 (+) True G201040
TU227566 lncRNA upstream 57276 89472539 ~ 89473610 (+) True G201041
TU227613 lncRNA downstream 2000 89533363 ~ 89533603 (+) True G201085
TU227614 lncRNA downstream 3838 89535201 ~ 89535490 (+) True G201086
TU227615 lncRNA downstream 4129 89535492 ~ 89535873 (+) True G201087
TU227676 lncRNA downstream 91528 89622891 ~ 89716417 (+) True G201142
TU227718 lncRNA downstream 144598 89675961 ~ 89677325 (+) True G201176
XM_021576322.2 mRNA upstream 28537 89500512 ~ 89502349 (+) True mphosph6
XM_021576253.2 mRNA upstream 58368 89470379 ~ 89472518 (+) True snx20
XM_021576243.2 mRNA upstream 108448 89395057 ~ 89422438 (+) False LOC110499234
XM_036958494.1 mRNA upstream 327923 89168314 ~ 89202963 (+) False ankrd27
XM_036958500.1 mRNA downstream 24210 89555573 ~ 89577445 (+) False LOC110499288
XM_036958498.1 mRNA downstream 24211 89555574 ~ 89577445 (+) True LOC110499288
XM_021576456.2 mRNA downstream 197577 89728940 ~ 89740218 (+) False LOC110499364
XM_021576474.2 mRNA downstream 197577 89728940 ~ 89740218 (+) True LOC110499364
XM_021576501.2 mRNA downstream 241236 89772599 ~ 89793099 (+) False LOC110499385
TU227536 other upstream 108448 89419769 ~ 89422438 (+) True LOC110499234
TU225538 other upstream 1662919 87866877 ~ 87867967 (+) True G199223
TU225054 other upstream 1993958 87535936 ~ 87536928 (+) True G198811
TU225027 other upstream 2034151 87493623 ~ 87496735 (+) True G198784
TU224773 other upstream 2380396 87150202 ~ 87150490 (+) True G198575
TU228729 other downstream 915755 90447118 ~ 90447573 (+) True G202039
TU228879 other downstream 1185579 90716942 ~ 90717421 (+) True G202185
TU229614 other downstream 1705662 91237025 ~ 91237991 (+) False LOC110499641
TU230045 other downstream 1834974 91366337 ~ 91539373 (+) True mgat4c
TU230224 other downstream 2090638 91622001 ~ 91624293 (+) True G203414

Expression Profile