RNA id: TU227613



Basic Information


Item Value
RNA id TU227613
length 241
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G201085
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 89533363 ~ 89533603 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AGCATGTGCATCTTCAAGGtgtacccattgttcctctttagtgcatttaactaTACAGTATGTCgcaagtaaaagccttgggtaGCAAGTTGATACAATTACATgtctggaaggttaaaaccaccctcagattTAGGAAGATGTAAAACTTTACTTTTTATTCTATGAATTTTAATTGCCCATATAAAGTCTGTTATAACTGAGCATACTTCGCTGGGGTAAAAGGTATTCACATTGGGAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU227611 lncRNA upstream 2000 89530886 ~ 89531363 (+) True G201083
TU227610 lncRNA upstream 2597 89530491 ~ 89530766 (+) True G201082
TU227609 lncRNA upstream 3141 89529749 ~ 89530222 (+) True G201081
TU227573 lncRNA upstream 25355 89506627 ~ 89508008 (+) True G201045
TU227565 lncRNA upstream 56757 89475990 ~ 89476606 (+) True G201040
TU227614 lncRNA downstream 1598 89535201 ~ 89535490 (+) True G201086
TU227615 lncRNA downstream 1889 89535492 ~ 89535873 (+) True G201087
TU227676 lncRNA downstream 89288 89622891 ~ 89716417 (+) True G201142
TU227718 lncRNA downstream 142358 89675961 ~ 89677325 (+) True G201176
TU227783 lncRNA downstream 273322 89806925 ~ 89807763 (+) True G201235
XM_021576322.2 mRNA upstream 31014 89500512 ~ 89502349 (+) True mphosph6
XM_021576253.2 mRNA upstream 60845 89470379 ~ 89472518 (+) True snx20
XM_021576243.2 mRNA upstream 110925 89395057 ~ 89422438 (+) False LOC110499234
XM_036958494.1 mRNA upstream 330400 89168314 ~ 89202963 (+) False ankrd27
XM_036958500.1 mRNA downstream 21970 89555573 ~ 89577445 (+) False LOC110499288
XM_036958498.1 mRNA downstream 21971 89555574 ~ 89577445 (+) True LOC110499288
XM_021576456.2 mRNA downstream 195337 89728940 ~ 89740218 (+) False LOC110499364
XM_021576474.2 mRNA downstream 195337 89728940 ~ 89740218 (+) True LOC110499364
XM_021576501.2 mRNA downstream 238996 89772599 ~ 89793099 (+) False LOC110499385
TU227536 other upstream 110925 89419769 ~ 89422438 (+) True LOC110499234
TU225538 other upstream 1665396 87866877 ~ 87867967 (+) True G199223
TU225054 other upstream 1996435 87535936 ~ 87536928 (+) True G198811
TU225027 other upstream 2036628 87493623 ~ 87496735 (+) True G198784
TU224773 other upstream 2382873 87150202 ~ 87150490 (+) True G198575
TU228729 other downstream 913515 90447118 ~ 90447573 (+) True G202039
TU228879 other downstream 1183339 90716942 ~ 90717421 (+) True G202185
TU229614 other downstream 1703422 91237025 ~ 91237991 (+) False LOC110499641
TU230045 other downstream 1832734 91366337 ~ 91539373 (+) True mgat4c
TU230224 other downstream 2088398 91622001 ~ 91624293 (+) True G203414

Expression Profile