RNA id: TU228511


Basic Information

Item Value
RNA id TU228511
length 230
lncRNA type intronic
GC content 0.50
exon number 1
gene id G201851
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 90136141 ~ 90136370 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAACAATAAATTTGTCAATAGATTTTTTTGATTCATTCTCATCAATGACAACATTCTAGAACTGAGTTATCACTCATCTAAGTCTGGTATCCACACTGTATTGCTAAGATGCTCAAACTTTTCTTAATAGCTACACTCACCAACACAGGATAAACTTTATCCCTCATGCTGGCCCTGACCAAACCGGTATGTTGCCCTTCATCATAGCTGCacttctccacatggccaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU228506 lncRNA upstream 5170 90130768 ~ 90130971 (+) True G201848
TU227949 lncRNA upstream 65898 90069290 ~ 90070243 (+) True G201379
TU227842 lncRNA upstream 100189 90034953 ~ 90035952 (+) True G201279
TU227916 lncRNA upstream 121094 90014776 ~ 90015047 (+) True G201349
TU227912 lncRNA upstream 127237 90008517 ~ 90008904 (+) True G201345
TU228549 lncRNA downstream 48251 90184621 ~ 90184836 (+) True G201888
TU228553 lncRNA downstream 52385 90188755 ~ 90188962 (+) True G201892
TU228554 lncRNA downstream 52712 90189082 ~ 90189469 (+) True G201893
TU228556 lncRNA downstream 57105 90193475 ~ 90193794 (+) True G201895
TU228557 lncRNA downstream 58140 90194510 ~ 90194758 (+) True G201896
XM_036958707.1 mRNA upstream 92317 89937146 ~ 90043824 (+) False LOC110502295
XM_036958735.1 mRNA downstream 2307 90138677 ~ 90170115 (+) True asz1
XM_021576610.2 mRNA downstream 46911 90183281 ~ 90196936 (+) True wnt2
XM_036958868.1 mRNA downstream 441550 90577920 ~ 90594338 (+) False cpa5
XM_021576668.2 mRNA downstream 442531 90578901 ~ 90594338 (+) False cpa5
XM_021576659.2 mRNA downstream 442532 90578902 ~ 90594338 (+) True cpa5
TU227536 other upstream 713703 89419769 ~ 89422438 (+) True LOC110499234
TU225538 other upstream 2268174 87866877 ~ 87867967 (+) True G199223
TU225054 other upstream 2599213 87535936 ~ 87536928 (+) True G198811
TU225027 other upstream 2639406 87493623 ~ 87496735 (+) True G198784
TU224773 other upstream 2985651 87150202 ~ 87150490 (+) True G198575
TU228729 other downstream 310748 90447118 ~ 90447573 (+) True G202039
TU228879 other downstream 580572 90716942 ~ 90717421 (+) True G202185
TU229614 other downstream 1100655 91237025 ~ 91237991 (+) False LOC110499641
TU230045 other downstream 1229967 91366337 ~ 91539373 (+) True mgat4c
TU230224 other downstream 1485631 91622001 ~ 91624293 (+) True G203414

Expression Profile