RNA id: TU228547


Basic Information

Item Value
RNA id TU228547
length 1632
lncRNA type antisense_over
GC content 0.41
exon number 4
gene id G201886
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 90202879 ~ 90206418 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTACTCACTGCCCTGAAAATGTGTATTGTACTCACTGCCCTGAAAATGTGTATTGTACTCAATGCCGTGAAaatgtgtgcaagtgtgtgttaCAGAGTAAAGGCAATGTGTAACACAATGAAGTTATGGCGTATGAGGTAAAgcggatgttgtgtgtgtgtgtgtgtgtgttactcactgCCCTCCCAGGTACAGTGCAGCAGGTTAAGGGCCCCCTCCACCCTCTTCCAGTGCTGCAGGTGAAAGAAGGCGTAGGCTATGGCCTCACTGTCCCCTCGCTTCAGAATGTGCTCTGGAGGCAGTATTAAACTTTTCATTTCTAACAGGTactgtggaagagagagagagagagagtcagtaagTACAATATAAAATGCACAACATAAACATACTTTTTAATGCAACTTTATACCAGTTCTTACAACCAGGAGAACGTCGATCAGCATTCAAGTAGCACCATTATAAgcgtcgtagtagtagtagtggtagtagtagtagtagtagtagtggttagtggtagtagtagtggtggttagtggtagtagtagtagtggtagtattagtagtagtagtagtggtagtagtggttagtagtagtagtagtagtagtggttagtagtagtagtagtggtggttagtggtagtagtagtggttagtggtagtgctacagtagtagtagtagtattagtgctacagtagtagtagttagtggtgctgcagtagtagtagtagtagtagtggttagtggtgctgcagtagtagtagtagtagtagtggttagtggtagtagtgctacagtagtagtggtagtagtagtagtagtagtagtagtagtcgtagtagtagtgctacaggagtagtagtagtagtagtagtgctacaggagtagtagtagtagtagtagtagttagtggTGCtgcattagtagtagtggttagtggtgctgcattagtagtagtagtagtagtggttagtggtagtagtagtagtgctacagtggtagtagtagtagtagtagtgctacaggagtagtagtagtagtagtagtagtagtagtagtggttagtggtgctgcagtagtagtagtagtagtagtagtagtagtagtagtggttagtggtgctgcagtagtagtagtagtagtggttagtggtgctgcagtagtagtagtagttgaggttagtggtgctgcagtagtgctacagtagtagtagttgctaGTGGTGCTatagtcagtggtgtaaagtacttaagtagtactttcaagtatttttacttaagtaatttTGGGGGGAATCTGTACTTAACTATTTACTTTTTACTTCAATACATTccgaaagaaaataatgtacttttaactccatacattttccctgacacccagaaGTACTCTTTACATTAATGCTTAGCAGGAGAGGTAAATGGTCTaatttacacacttatcaagataaaATCCCATGtcatcctactgcctctgatctggtggactcactaaagaCATGCTTCATTTCTAAATGATATCTGAGAGTTggactgtgcccctggctatccgctTTTACATGTTATGgttctgtctggtttgcttaatatacagAATTATAAGTGACttatacttttagacttttactcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU228557 lncRNA upstream 8121 90194510 ~ 90194758 (+) True G201896
TU228556 lncRNA upstream 9085 90193475 ~ 90193794 (+) True G201895
TU228554 lncRNA upstream 13410 90189082 ~ 90189469 (+) True G201893
TU228553 lncRNA upstream 13917 90188755 ~ 90188962 (+) True G201892
TU228549 lncRNA upstream 18043 90184621 ~ 90184836 (+) True G201888
TU228559 lncRNA downstream 1843 90208261 ~ 90211007 (+) True G201898
TU228620 lncRNA downstream 94179 90300597 ~ 90321713 (+) True G201944
TU228648 lncRNA downstream 131740 90338158 ~ 90340558 (+) True G201968
TU228696 lncRNA downstream 205167 90411585 ~ 90432515 (+) True G202007
TU228725 lncRNA downstream 235423 90441841 ~ 90442145 (+) True G202035
XM_021576610.2 mRNA upstream 5943 90183281 ~ 90196936 (+) True wnt2
XM_036958742.1 mRNA upstream 32764 90130540 ~ 90170115 (+) False asz1
XM_036958738.1 mRNA upstream 32764 90132005 ~ 90170115 (+) False asz1
XM_036958735.1 mRNA upstream 32764 90138677 ~ 90170115 (+) True asz1
XM_036958724.1 mRNA upstream 159055 89937146 ~ 90043824 (+) False LOC110502295
XM_036958868.1 mRNA downstream 371502 90577920 ~ 90594338 (+) False cpa5
XM_021576668.2 mRNA downstream 372483 90578901 ~ 90594338 (+) False cpa5
XM_021576659.2 mRNA downstream 372484 90578902 ~ 90594338 (+) True cpa5
XM_021576675.2 mRNA downstream 388032 90594450 ~ 90599294 (+) True LOC110499537
XM_021576649.2 mRNA downstream 400672 90607090 ~ 90667412 (+) True poc1b
TU227536 other upstream 780441 89419769 ~ 89422438 (+) True LOC110499234
TU225538 other upstream 2334912 87866877 ~ 87867967 (+) True G199223
TU225054 other upstream 2665951 87535936 ~ 87536928 (+) True G198811
TU225027 other upstream 2706144 87493623 ~ 87496735 (+) True G198784
TU224773 other upstream 3052389 87150202 ~ 87150490 (+) True G198575
TU228729 other downstream 240700 90447118 ~ 90447573 (+) True G202039
TU228879 other downstream 510524 90716942 ~ 90717421 (+) True G202185
TU229614 other downstream 1030607 91237025 ~ 91237991 (+) False LOC110499641
TU230045 other downstream 1159919 91366337 ~ 91539373 (+) True mgat4c
TU230224 other downstream 1415583 91622001 ~ 91624293 (+) True G203414

Expression Profile