RNA id: TU228559


Basic Information

Item Value
RNA id TU228559
length 2716
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id G201898
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 90208261 ~ 90211007 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cgtgcagactggcactaagaacagagGGAAAGTTTCCCTAGTCAGCtccattattagtgcaatgccccttaaagtgttgcTCTGTCCTACCAGTGTGACAAAGTGGGggtccaccccctccctcctcttcccttccccaTGGGCTAGGTCCGTCTTCTGTGCACGGTTCAGCGGCCCATCCCGTGCCCCCTGCCCTCGTGCCTTGAACGCTTTCAGTGGATAaagctggagaactgcaaggcaatcccattgtgtgccactcaggagccatgAACAATATGACCAatgtatattgtcctgctaattacagggttaataatatataTGTGAGAATATCCAACAGGCTTTTATATCattctaaattaataataataataataataatataataacaataataaatcgCTTTGTTTTAGTTGTAAAATAACGTAAAATGAGCAAGAAAAAGTCCATTATTGAACATGGTGTGAcacattgttactaatttgtaaataaagctaATTTGTTtttttagaattatttatttctgtttttagagggagagaaacctcATGGGTCTTCCAGTCAAGGCCGGCACGGGTATTGGACCAGCATCTgtagcagtgtcttagaccgttgCACCACTCAGGCACTGTACAGCATGCCCTGTTGGGAGtggcctacagtactacagtaagaccaaaataaaatgattaaaaaccttagtgtaacaacagttttagtaagtaatattGAAGTCGTACACAATTATCattttctatttaggtttatgtcgcccattcattgtcagagaCACAGTTGGACCCAAAAGCGTAATCAGTGCTTTAACTgtccttgcgctggtctggagaaATTAAGTGGTGatgcagggtaccgtactaaacaaCAAATGACCTCTAAATCCTGCAGCATAATCGCAAAACTTTTAGTGGAGTAACCACTGTAGTAATGCTACTAgcagttgtcatgacgttggcctctttgggtttagcaaccccatccccctctccctgcctcccccttgcctccttcaactaggctgctgtggtcagaggtagtaaattcctgagaagacctccttgtggccacacagtatagagagagtagattttcatggagcacaaaggaatttcttccacctcacagaacttgaggtacgaaatcggtgaagaatccagctacgaactggtccgtttgtcacaacttgggaagctcatgggagacggtgtggccacattaccataacgctgtttatataatagcctcagatatgaggtttacatctaattgttgtataagatgaatgagtgaggatgatactgtttgtgtaattgtgtaatatgactttggactgtttaatgaagaaaaatacaattcccttttgatttgaactaaatcagaggatcgcccctgagcccagttagggtcagacatcctggaccgcccctgagcccagttagggtcagacatcctggaccgaccctgagcccagttagggccagacatcctggaccgcccctgagcccagttagggtcagacatcctgggacagccctcttcggcccttccgaataaaacccccactcgggttttcgatcagcagaccgagcttacctcaattacgagatggctaaaggttgcagaccatgtttttctccattaggaggacaaaggttgtagaccattgctgaatattttaaccataccacgtggttaaactcttagactatcgataccgacagaataagaataAGAACAAGAACAATTAaatactagtctgcagctaggaattcggtatcattgaacgggaagaacgacaaccgccgaaacatccattctataacgagtcactctgaacaatcccctctaaccactactgagagggagagagatggactattctacaaaataaattaacttttcaccagcgatcaagacgacacaccgagtgtaaatatatatattgattgcaattgttcccgaatgagtgagcgttcatgtgcaaaggattaacaTTTCATttgttataattattaactctgtagtgacttctcagctgacccccacttcccttttgtctaacaagccgccatgccggttcagcccactagggcacattctcttatcatttcttgtaaccatatttactgtttgtttatgcatttctgtgaattacttagttagtaataaataaatgatttaagacaactgatgtgaattacttagttagtaatacataaatgatttaagacaattgatgtatggactcatagtgaagactgggttcgtgcagataaccaacaatttacgacgtttggaatgagactaatgtgAGGTAATGTAAATAATTTATTAAtttgaagactaattgatcagataaaatatcaaaaaagttattttaggaaatgataactttgtaatctgaatatttttccttggtgccccgacttcgtagtaattacggttacatgattaatcagtctaatcgcgtaataactaattacagagaatctttgataaaaaactataagtcttcatttaatgatagtaaagacacgacagtgtTACGTATGTAGCTCCATTGTTGTGTCTTACTTTGGGGACGTGTGGGTTGAACTCCACAGCTCTGTGTATGGCTTCTACAGCATTCATCTCTGCTGTACTCAACCCTCGCCTTGACGCTGCCTCTGGAGAGAACCTGCATGGGGAACACGgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU228547 lncRNA upstream 1843 90202879 ~ 90206418 (+) True G201886
TU228557 lncRNA upstream 13503 90194510 ~ 90194758 (+) True G201896
TU228556 lncRNA upstream 14467 90193475 ~ 90193794 (+) True G201895
TU228554 lncRNA upstream 18792 90189082 ~ 90189469 (+) True G201893
TU228553 lncRNA upstream 19299 90188755 ~ 90188962 (+) True G201892
TU228620 lncRNA downstream 89590 90300597 ~ 90321713 (+) True G201944
TU228648 lncRNA downstream 127151 90338158 ~ 90340558 (+) True G201968
TU228696 lncRNA downstream 200578 90411585 ~ 90432515 (+) True G202007
TU228725 lncRNA downstream 230834 90441841 ~ 90442145 (+) True G202035
TU228727 lncRNA downstream 233187 90444194 ~ 90444483 (+) True G202037
XM_021576610.2 mRNA upstream 11325 90183281 ~ 90196936 (+) True wnt2
XM_036958742.1 mRNA upstream 38146 90130540 ~ 90170115 (+) False asz1
XM_036958738.1 mRNA upstream 38146 90132005 ~ 90170115 (+) False asz1
XM_036958735.1 mRNA upstream 38146 90138677 ~ 90170115 (+) True asz1
XM_036958730.1 mRNA upstream 164437 89937149 ~ 90043824 (+) True LOC110502295
XM_036958868.1 mRNA downstream 366913 90577920 ~ 90594338 (+) False cpa5
XM_021576668.2 mRNA downstream 367894 90578901 ~ 90594338 (+) False cpa5
XM_021576659.2 mRNA downstream 367895 90578902 ~ 90594338 (+) True cpa5
XM_021576675.2 mRNA downstream 383443 90594450 ~ 90599294 (+) True LOC110499537
XM_021576649.2 mRNA downstream 396083 90607090 ~ 90667412 (+) True poc1b
TU227536 other upstream 785823 89419769 ~ 89422438 (+) True LOC110499234
TU225538 other upstream 2340294 87866877 ~ 87867967 (+) True G199223
TU225054 other upstream 2671333 87535936 ~ 87536928 (+) True G198811
TU225027 other upstream 2711526 87493623 ~ 87496735 (+) True G198784
TU224773 other upstream 3057771 87150202 ~ 87150490 (+) True G198575
TU228729 other downstream 236111 90447118 ~ 90447573 (+) True G202039
TU228879 other downstream 505935 90716942 ~ 90717421 (+) True G202185
TU229614 other downstream 1026018 91237025 ~ 91237991 (+) False LOC110499641
TU230045 other downstream 1155330 91366337 ~ 91539373 (+) True mgat4c
TU230224 other downstream 1410994 91622001 ~ 91624293 (+) True G203414

Expression Profile