RNA id: TU228648


Basic Information

Item Value
RNA id TU228648
length 2269
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id G201968
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 90338158 ~ 90340558 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGATAATATAGCTTTATTACACTGAGACTGTCAGACGGCATAACGACGTAACAACATATGTACCATCATTATTTTCATAGACGAACCCGTAACAGTGCTCATACAGACACTCACACTGCACAGACAGTGAGAAACATGGACCAATTCATGGATTTACAAGCCATTTAGTTACCAATAGAAAACATAGAAGTCTATAGTGAAGGAAGTGAACCTGCTAGCTCCAGTTGTTCAATGACTGTACAGTATCTTTAGTTTGTTTGTACTGTGCTGTACCTACAACGGTCACCTGTCATAAAGTATATACACACACGTTTACCAGTTAAATCCTACATATAGAAGACACCTCCACAAAGGTACTATCCTTTTAATATCATTTTGTACAAAAGGCAGTGGTTCTTCTAAAGTTTAGTTTAGGGGACTTGTTCATTGTTGTGGCACCATTGCTCAGTTATTGCATACCATTGGACCAATATTGATTGAGGCTCATTTTCATCATAAAGGCATTCTAAAAAATATAGTACagcattttaaacatttattttaacaaACATTCATATCTGTCCATTGCTGGCCTTATCATTAATTACATCGCAGCAGTCATAGTAAAAAGCCAAACGCGTCACCAAGGAAACGCAAAATGGTAACATTTTAACATTGAAGTGGTCTTTCAAAATGCTGACATAGCTATTGTACGAATACTATCATGATTGACAGTAAAAGTACTTTTCTCAACTGACATAACACTATTATTATGATGCCCAAACGCATCAAACGTTCAAACATGTCTCCAGTTTTCCCCATTTGACTGTCTGAAGTCAAAAAGATGATGTCCGTTTTCAGGCTGAGCTTTCACAAACCGTTATGACACATGCTATGTAGACATTATGACAGGCCGTTTCAAGTCAGTGTTACCTACCAAAATACAAAAACACTTTTCAACTGGGAAACATCTGCAGATTACTAATAGGTGAGTCACTCACGGCAACAAAGCAGCAAGACATTTAAAACGAAGCACATCAAAAGGGAATCATCAAAGATTATTACACTTTAAGAAGTATCCAGTGTAGCTGCTACACACCGCACGGGCCGGGTGGCAGATTGGTCCTCTCGCCAGCTACTCTTCACCACCTCAGTTACTGACAACATCACCTGGAGGCTGGAGCACACATTGTAACGGCAAAGCAGGCATCATTTGTCTTCCTTCAGTCCCGGTGCGCAGGGAGCTTGGAGGGAGGAATGCGAGGAGAAGTGGGAGGAGAGGGGCATTCAGTGACAGTACGGAGGAGGAAGGTGTAACATGTTTCTTTACAATACACCACCTTTCATTGACATTGAGAAAAATAACAGCTGGAGCCTGGCACTTAGCCATATCTCTAAGCACATGCCACCCAGTAACAAGCAGAAATGTCTCCAAAATCCACCGGTCCCCTCGTTGGGGAAGGGAATCGTTCAAATCTTGGGCGCTTCACTTGTACTTCATACACACAATGTGCTTCTTTAGGCTTTGTTCTTTGAAAAGGTTCTCCCATGTCTCCAAATTGTCTGCGATAGAGACAAGAGGCCTGACCTCCTGAACTCAGGCTCCAGGGTCATACCAGGGTCAAAGGTCATTAGATATTCTAGAGCATGTTCTATGTAGTCAAGGAGAGGCAGACCAAGGTCATCCTCACAGTTCATAAAGGCCTCAAGCGTACACTCATCGGTCAGTATGTATACACattacaTACGTACTGAACACACTCATCggtcagtatatatacacattacaTACTGAACGCACGGTACAGGTCAGTATCCTCAAACTGTCTTTTCTCAGTCAACGAGTTTGTccagtgtctgtctgttagtCACATACACTCGTTCTCCAGTGACCCAAAGTCTTCACCACCTCAAGCCCACTATTTactccctctttctttttctctgtcAAGCACATtatttttcctctcctcctttcatctcatgtcctctcctttcttccatcactcttttcttttcttctctctctctctccacccccatcCCCCATCAGGTGCAACAGTCTCGCTCCAGGGGGTGGCCCTGACGGGTAGAGGAAGAGGACGAGGATGAGGAGTAGGAAATGAGTGAGGGATAGGGGGTCATCTTGTCGATGTTGACATAGGTGGTGTTGAGAAGTATGTAGTGCTCTCCACTGAAGCTGGAGAAGATGGACTTGATACGGGACACCAGCTCTGAGAAGGTAGGCCTCCGCTCCGGTCTAGGGTGCCAGCACTCAACCATCACGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU228620 lncRNA upstream 16445 90300597 ~ 90321713 (+) True G201944
TU228559 lncRNA upstream 127151 90208261 ~ 90211007 (+) True G201898
TU228547 lncRNA upstream 131740 90202879 ~ 90206418 (+) True G201886
TU228557 lncRNA upstream 143400 90194510 ~ 90194758 (+) True G201896
TU228556 lncRNA upstream 144364 90193475 ~ 90193794 (+) True G201895
TU228696 lncRNA downstream 71027 90411585 ~ 90432515 (+) True G202007
TU228725 lncRNA downstream 101283 90441841 ~ 90442145 (+) True G202035
TU228727 lncRNA downstream 103636 90444194 ~ 90444483 (+) True G202037
TU228728 lncRNA downstream 104712 90445270 ~ 90445562 (+) True G202038
TU228730 lncRNA downstream 107332 90447890 ~ 90448454 (+) True G202040
XM_021576610.2 mRNA upstream 141222 90183281 ~ 90196936 (+) True wnt2
XM_036958742.1 mRNA upstream 168043 90130540 ~ 90170115 (+) False asz1
XM_036958738.1 mRNA upstream 168043 90132005 ~ 90170115 (+) False asz1
XM_036958735.1 mRNA upstream 168043 90138677 ~ 90170115 (+) True asz1
XM_036958730.1 mRNA upstream 294334 89937149 ~ 90043824 (+) True LOC110502295
XM_036958868.1 mRNA downstream 237362 90577920 ~ 90594338 (+) False cpa5
XM_021576668.2 mRNA downstream 238343 90578901 ~ 90594338 (+) False cpa5
XM_021576659.2 mRNA downstream 238344 90578902 ~ 90594338 (+) True cpa5
XM_021576675.2 mRNA downstream 253892 90594450 ~ 90599294 (+) True LOC110499537
XM_021576649.2 mRNA downstream 266532 90607090 ~ 90667412 (+) True poc1b
TU227536 other upstream 915720 89419769 ~ 89422438 (+) True LOC110499234
TU225538 other upstream 2470191 87866877 ~ 87867967 (+) True G199223
TU225054 other upstream 2801230 87535936 ~ 87536928 (+) True G198811
TU225027 other upstream 2841423 87493623 ~ 87496735 (+) True G198784
TU224773 other upstream 3187668 87150202 ~ 87150490 (+) True G198575
TU228729 other downstream 106560 90447118 ~ 90447573 (+) True G202039
TU228879 other downstream 376384 90716942 ~ 90717421 (+) True G202185
TU229614 other downstream 896467 91237025 ~ 91237991 (+) False LOC110499641
TU230045 other downstream 1025779 91366337 ~ 91539373 (+) True mgat4c
TU230224 other downstream 1281443 91622001 ~ 91624293 (+) True G203414

Expression Profile