RNA id: TU228728


Basic Information

Item Value
RNA id TU228728
length 293
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G202038
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 90445270 ~ 90445562 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgcactagctattacagtgaagaaataccatgctattgtttgaggagaatgtacagttttgaacatgaaaagttattaataaataaattaggcacatttgggcagtcttgatacaacatcttgaacagaaatgcaatggttcattggatcagcctacaactttgcacatacactgctgccaacTAGTGGCTAATATCTAAATTTCATCTGGgatggaataatacattgtggcctttctcttgcatttcaaagatgatagtACCaagaaatacccccccccccaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU228727 lncRNA upstream 787 90444194 ~ 90444483 (+) True G202037
TU228725 lncRNA upstream 3125 90441841 ~ 90442145 (+) True G202035
TU228696 lncRNA upstream 12755 90411585 ~ 90432515 (+) True G202007
TU228648 lncRNA upstream 104712 90338158 ~ 90340558 (+) True G201968
TU228620 lncRNA upstream 123557 90300597 ~ 90321713 (+) True G201944
TU228730 lncRNA downstream 2328 90447890 ~ 90448454 (+) True G202040
TU228731 lncRNA downstream 4470 90450032 ~ 90450237 (+) True G202041
TU228742 lncRNA downstream 26518 90472080 ~ 90472306 (+) True G202052
TU228745 lncRNA downstream 32866 90478428 ~ 90478647 (+) True G202055
TU228747 lncRNA downstream 37404 90482966 ~ 90483208 (+) True G202057
XM_021576610.2 mRNA upstream 248334 90183281 ~ 90196936 (+) True wnt2
XM_036958742.1 mRNA upstream 275155 90130540 ~ 90170115 (+) False asz1
XM_036958738.1 mRNA upstream 275155 90132005 ~ 90170115 (+) False asz1
XM_036958735.1 mRNA upstream 275155 90138677 ~ 90170115 (+) True asz1
XM_036958730.1 mRNA upstream 401446 89937149 ~ 90043824 (+) True LOC110502295
XM_036958868.1 mRNA downstream 132358 90577920 ~ 90594338 (+) False cpa5
XM_021576668.2 mRNA downstream 133339 90578901 ~ 90594338 (+) False cpa5
XM_021576659.2 mRNA downstream 133340 90578902 ~ 90594338 (+) True cpa5
XM_021576675.2 mRNA downstream 148888 90594450 ~ 90599294 (+) True LOC110499537
XM_021576649.2 mRNA downstream 161528 90607090 ~ 90667412 (+) True poc1b
TU227536 other upstream 1022832 89419769 ~ 89422438 (+) True LOC110499234
TU225538 other upstream 2577303 87866877 ~ 87867967 (+) True G199223
TU225054 other upstream 2908342 87535936 ~ 87536928 (+) True G198811
TU225027 other upstream 2948535 87493623 ~ 87496735 (+) True G198784
TU224773 other upstream 3294780 87150202 ~ 87150490 (+) True G198575
TU228729 other downstream 1556 90447118 ~ 90447573 (+) True G202039
TU228879 other downstream 271380 90716942 ~ 90717421 (+) True G202185
TU229614 other downstream 791463 91237025 ~ 91237991 (+) False LOC110499641
TU230045 other downstream 920775 91366337 ~ 91539373 (+) True mgat4c
TU230224 other downstream 1176439 91622001 ~ 91624293 (+) True G203414

Expression Profile