RNA id: TU228742


Basic Information

Item Value
RNA id TU228742
length 227
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G202052
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 90472080 ~ 90472306 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgtgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtgtctgtgtgtgtgtgtgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtgtgtctgtctgtctgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU228731 lncRNA upstream 21843 90450032 ~ 90450237 (+) True G202041
TU228730 lncRNA upstream 23626 90447890 ~ 90448454 (+) True G202040
TU228728 lncRNA upstream 26518 90445270 ~ 90445562 (+) True G202038
TU228727 lncRNA upstream 27597 90444194 ~ 90444483 (+) True G202037
TU228725 lncRNA upstream 29935 90441841 ~ 90442145 (+) True G202035
TU228745 lncRNA downstream 6122 90478428 ~ 90478647 (+) True G202055
TU228747 lncRNA downstream 10660 90482966 ~ 90483208 (+) True G202057
TU228874 lncRNA downstream 236270 90708576 ~ 90708831 (+) True G202180
TU229253 lncRNA downstream 263219 90735525 ~ 90735817 (+) True G202514
TU229273 lncRNA downstream 295554 90767860 ~ 90768063 (+) True G202534
XM_021576610.2 mRNA upstream 275144 90183281 ~ 90196936 (+) True wnt2
XM_036958742.1 mRNA upstream 301965 90130540 ~ 90170115 (+) False asz1
XM_036958738.1 mRNA upstream 301965 90132005 ~ 90170115 (+) False asz1
XM_036958735.1 mRNA upstream 301965 90138677 ~ 90170115 (+) True asz1
XM_036958730.1 mRNA upstream 428256 89937149 ~ 90043824 (+) True LOC110502295
XM_036958868.1 mRNA downstream 105614 90577920 ~ 90594338 (+) False cpa5
XM_021576668.2 mRNA downstream 106595 90578901 ~ 90594338 (+) False cpa5
XM_021576659.2 mRNA downstream 106596 90578902 ~ 90594338 (+) True cpa5
XM_021576675.2 mRNA downstream 122144 90594450 ~ 90599294 (+) True LOC110499537
XM_021576649.2 mRNA downstream 134784 90607090 ~ 90667412 (+) True poc1b
TU228729 other upstream 24507 90447118 ~ 90447573 (+) True G202039
TU227536 other upstream 1049642 89419769 ~ 89422438 (+) True LOC110499234
TU225538 other upstream 2604113 87866877 ~ 87867967 (+) True G199223
TU225054 other upstream 2935152 87535936 ~ 87536928 (+) True G198811
TU225027 other upstream 2975345 87493623 ~ 87496735 (+) True G198784
TU228879 other downstream 244636 90716942 ~ 90717421 (+) True G202185
TU229614 other downstream 764719 91237025 ~ 91237991 (+) False LOC110499641
TU230045 other downstream 894031 91366337 ~ 91539373 (+) True mgat4c
TU230224 other downstream 1149695 91622001 ~ 91624293 (+) True G203414
TU230248 other downstream 1196530 91668836 ~ 91671899 (+) True G203438

Expression Profile