RNA id: TU229406


Basic Information

Item Value
RNA id TU229406
length 2120
lncRNA type read_through
GC content 0.39
exon number 2
gene id G202656
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 90956410 ~ 91052753 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaattgatcagaaatacagtgaagccattgttaatgttgtaaatgactattgtagcgtGAAACAGCAGATTATTTATGGAATAtcaacagaggcccattattagcaaccatcactcctgagttccaatggcacattgtgttagctaatccaagtttataattttaaaaggctaattgatcattagaaaaagctcttgcaattatgttagcacagctgaaaaatgtcGTTGTGACTaaggaagcaataaaactgggccttttttagactagttgagtgtctggaaCATGAGCATTTGTGGTTTTGAtttcaggctcaaaatgaccagaaacaaagtgctttcttctgaatctcgtcagtctattcttgttctgagaaatgaaggctattccaagcgagaaattgcaaagaaactgaagatctcgtacaacgctgtgtactactcccgtgacagaacagtgcaaactgtctctaaccagaataaaaagagtAGTGGGagtccccggtgcacaactgataAAGAGGACaattacattagagtgtctagtttgagaaacagtccTCAAGGCATCTGTTtcacaaactagacactctaatgtacttgtcctcttgctcagttgtgcaccggggcctcccactcctctttctattctggttagagccagttcgcgctgttctgtgaaggagtagtacacagcattgtacaagatcttcagtttcttggcaatttctcacatggaataaccttcatttctcagaacaagaatagactgacgagtttcagaagaaagttctttgtttctggccattttgagcctttaatcaaacccacaaatgttgatgttccagatactcaactagtctaaagaaggccatttgtattgcttttaatcaggacaacagttttcagctgtggtaacataattgcaaaaggcttttctaatgatcaatttgcctttgaaaatgataaacttggattagctaacacaaagtgccattggaacacaggagtgatggttgctgataatgggcctctgtacgtctacgtagatattccattaaaaatcatctgtttccagctacaatagtcatttacaacattaacaACTGTCtcttcgttgttggtaatcaagcctaccagaaaatataaaaaacgatcggcctatatcgaatctccatTGCTCTCTAaaatttttgaaaaagctgttgcgctgtaactcactgccttcctgaagacaaacaatgtatacgaaatgcttcagtctggttttagatcccatcatagcactgagactgcacttgtgaaggtagtaaattaccttttaaatgGTGTCAAAACCGAggttctgcatctgtcctcgtgctcctagaccttagtgctgcttttgataccatcgatcaccacattcttttggagagattggaaatccaaattggtctacacggacaagttctggcctggtttagatcttatctgtcggaaagatatcactttgtctctgtagatggtttgttctctgacaaatcaactgtaaatttcagtgttcctcaaggttccgttttaggaccactattgttttcacaatatattttacctattggggatgtcattcgaaaacaatgttaactttcactgatatgcagatgacacacagctgtacatttcaatgaaacatggtgaagccccaaaattgccctccctagaagcctgtgtttcagacataaggaagtggatggctgcaaacgttctacttttaaactcggacaacagagatgcttgttctaggtcccaagaaacaaagagatcttctgttgaatctgacaatcttGATGGtcgtacagtcatctcaaataaaactgaaggacctctgTGTTACTCTGAACCCTAATCTCTCTTTtcacgaacatatcaagactgtttcaaggacagctttttccatctacgtaacattgcaaaaatcagaaactttctgtccaaaaatgatgcagaaaaattaattcatgcttttgttacttctaggttagactattgcaatgctctactttccggctacccggataaagcactaaataaacttcagttagtgctaaatacagctgctagactcctgactagaaccaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229297 lncRNA upstream 166743 90789452 ~ 90789667 (+) True G202558
TU229294 lncRNA upstream 169093 90787038 ~ 90787317 (+) True G202555
TU229273 lncRNA upstream 188347 90767860 ~ 90768063 (+) True G202534
TU229253 lncRNA upstream 220593 90735525 ~ 90735817 (+) True G202514
TU228874 lncRNA upstream 247579 90708576 ~ 90708831 (+) True G202180
TU229613 lncRNA downstream 185764 91238517 ~ 91238847 (+) True LOC110499641
TU229609 lncRNA downstream 199607 91252360 ~ 91254789 (+) True G202844
TU229990 lncRNA downstream 226998 91279751 ~ 91279959 (+) True G203197
TU230047 lncRNA downstream 315806 91368559 ~ 91369003 (+) True G203251
TU230079 lncRNA downstream 359260 91412013 ~ 91413548 (+) True G203281
XM_036958890.1 mRNA upstream 88085 90793248 ~ 90868325 (+) False si:dkey-106n21.1
XM_021576696.2 mRNA upstream 88085 90793826 ~ 90868325 (+) True si:dkey-106n21.1
XM_021576685.2 mRNA upstream 250385 90701413 ~ 90706025 (+) True dusp6
XM_021576649.2 mRNA upstream 288998 90607090 ~ 90667412 (+) True poc1b
XM_021576675.2 mRNA upstream 357116 90594450 ~ 90599294 (+) True LOC110499537
XM_036958919.1 mRNA downstream 104708 91157461 ~ 91213269 (+) False cep290
XM_036958913.1 mRNA downstream 104804 91157557 ~ 91213269 (+) False cep290
XM_036958904.1 mRNA downstream 105955 91158708 ~ 91213269 (+) False cep290
XM_036958920.1 mRNA downstream 105984 91158737 ~ 91213269 (+) True cep290
XM_021576732.2 mRNA downstream 182712 91235465 ~ 91239737 (+) False LOC110499641
TU228879 other upstream 238989 90716942 ~ 90717421 (+) True G202185
TU228729 other upstream 508837 90447118 ~ 90447573 (+) True G202039
TU227536 other upstream 1533972 89419769 ~ 89422438 (+) True LOC110499234
TU225538 other upstream 3088443 87866877 ~ 87867967 (+) True G199223
TU225054 other upstream 3419482 87535936 ~ 87536928 (+) True G198811
TU229614 other downstream 184272 91237025 ~ 91237991 (+) False LOC110499641
TU230045 other downstream 313584 91366337 ~ 91539373 (+) True mgat4c
TU230224 other downstream 569248 91622001 ~ 91624293 (+) True G203414
TU230248 other downstream 616083 91668836 ~ 91671899 (+) True G203438
TU230367 other downstream 774096 91826849 ~ 91847400 (+) True G203551

Expression Profile