RNA id: TU230773


Basic Information

Item Value
RNA id TU230773
length 1694
RNA type TUCP
GC content 0.51
exon number 2
gene id G203915
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 91589212 ~ 91591049 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTTCATATTACATTAATGATAGTGACTACCTGCACACATATTGAGAAATGTAGAGTTTGGCTTCATATGCTTTTGGAATGTATATAAACATACAGTAACAAATAGTCTAATGCTCCAAAACAAGAACACAAATAAATATAGTTTTCCCTTACATCTCATTGTTCTTTTGTCATTTTGATGAATCTCTGTGACATTATATCTTATAGCTTATGAAGAAAATCTGAATAGATAATGGTTTACAGTTTATAACAAAGGCAGACCATTTTAATATAAAACAGTATCAAATTAGTCCGCCAGGCAAATAGTGCATATAGCGGGATTGTGTATTGCCTTCTGAGGGGAATCCAGAGAGGCAGACATCTCAGACATCAGTGTCCAGCGGTGGCAGGATCATGTCCAGACAAGGAGACAGTGAGTCCTGACTGTGTGTTGAGCTGATCCCTGTGTCTGAGTCTGTGTCTGTAACATCTGTAGGGGACAGGCTGTGTTTCAGTCTCACTGCCTGTGGAACAATGCATGGGGCCGGGCATTTCATAGTCCCGAGCCTAGGCGTTTCCTGCACGCTGTCCCCCACCTGCAGTGTGCTCAGCTGGGAAGCCAGCTGCCAGCAATCCTGGTCCTTGGAGAACAGTGTGGATTCATAGCCCTTCAGCTCCTTCTCCAGCTGGGCCGTTTGGATGTGAAGGGACACGCCGGTGCGCAGACTAAGCCTCAGTTCGGCCTGCAGTCTCTCCAGTTCTGCCGCTTCCCAGGACAGGTCTGGGTCAGAAGTTACTCCTGCCGCTGCCCCCTGTAACTGAGTATCCTTGTCGGGGACCTCCGGCAACATTAACATGGCCCTCGTCAGCTCTACATCGATGTCCTGGGACAGTTGGGCTATAAGCTCCTCGTGCCTGAGCAGCTGCATCTCCAACTGGGCCACACTGTCACTAGTATACACgcactcctgcagcagctcctGCTCTGAAACCCCTGGCTGGCTGTCCAGGTTCTGGTTGTGGCTGTGGGGGAAGGAGATCGGGGAGAGTGAGGAGAATCCCTCATGGAGAAGCTCTGTATCCTGTTGTCCTCCCTGCAGCTCCATCTCGAAGCGTTCCATCTCACAGTCCAGCTCCCTCATCCTCTGGATCTGATGCCGGATGGTGTGGTCCTGTTGGATAAGCAGCTGAACCATCCTGTCtatctcctcgctgcccggagaAGATCCCACTACCCTCTTCTCCTTGTGGATCTTCTCCAGCTTCCTGAAGGCCTTCTTCACCATCCGTTTCTGTCTCTCCACTGGCAGTGACTGGGAGTACTGGGCCGGGCCTTGCTCCCATCTCTTAGCCCCCTTAGCCCCCTTTAATTTGGCCCCCTTCTTGCAGCCTGCTTGGGGTACAAAATCGCTGGCCTTGACCAGGGTGAACTGGATGAACGGTCGCTGGTCTCCCCAGGCATTCCATAGCCTGAGGATGCGGGTTAATGGGGGCAGAGCCCTCTCAAAGCCTTTCCAGCGCTCTAGCAGGCAGAAGTCTTTAGGGTCGCCATGCAGAATTTTCTTGTTCTCAGGGATGGTCTTGTGGTCGTCCAGCAAGGCCTGCACTATGTCAGCACACGTTGTGTGTTTGGTGACACCGCACACCACCTTCTcctcatcacacacagacacctggATCTCCTTTCCTAGCACAGTTTCCTTGTCATCTTTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230680 lncRNA downstream 88655 91464310 ~ 91500557 (-) True G203829
TU230630 lncRNA downstream 190730 91398064 ~ 91398482 (-) True G203780
TU229955 lncRNA downstream 350398 91238517 ~ 91238814 (-) True G203163
TU229954 lncRNA downstream 350775 91238230 ~ 91238437 (-) True G203162
TU229699 lncRNA downstream 662200 90850730 ~ 90927012 (-) True G202932
TU230889 lncRNA upstream 168689 91759738 ~ 91801240 (-) True G204018
TU230843 lncRNA upstream 180253 91771302 ~ 91773128 (-) True G203975
TU230924 lncRNA upstream 260268 91851317 ~ 91852018 (-) True G204050
TU230926 lncRNA upstream 262246 91853295 ~ 91853597 (-) True G204052
TU230979 lncRNA upstream 310908 91901957 ~ 91905169 (-) False G204096
XM_036958964.1 mRNA downstream 7906 91560700 ~ 91581306 (-) True nts
XM_021576730.2 mRNA downstream 334371 91239744 ~ 91254841 (-) False eif4g2b
XM_021576731.2 mRNA downstream 334371 91239744 ~ 91254841 (-) True eif4g2b
XM_021576734.2 mRNA downstream 359008 91227294 ~ 91230204 (-) True lyve1b
XM_021576733.2 mRNA downstream 359010 91227098 ~ 91230202 (-) False lyve1b
XR_002469996.2 mRNA upstream 15696 91606745 ~ 91624204 (-) True LOC110499699
XM_021576768.2 mRNA upstream 77348 91668397 ~ 91673730 (-) True alx1
XM_021580318.2 mRNA upstream 100804 91691853 ~ 91740829 (-) True lrriq1
XM_036958987.1 mRNA upstream 189152 91780201 ~ 91837027 (-) False lrrk2
XM_036958992.1 mRNA upstream 189152 91780201 ~ 91837180 (-) False lrrk2
TU228979 other downstream 1147787 90377557 ~ 90441425 (-) True G202279
TU228163 other downstream 1979322 89606837 ~ 89609890 (-) True LOC110499346
TU225173 other downstream 4262743 87322139 ~ 87326469 (-) True G198912
TU224521 other downstream 4685256 86903036 ~ 86903956 (-) True G198342
TU223618 other downstream 5625547 85959845 ~ 85963665 (-) True G197554
TU230896 other upstream 196138 91787187 ~ 91788103 (-) True G204024
TU231426 other upstream 807011 92398060 ~ 92439601 (-) False LOC110499897
TU232213 other upstream 1370995 92962044 ~ 92962934 (-) True G205192
TU234006 other upstream 2721375 94312424 ~ 94312774 (-) False G206742
TU234005 other upstream 2721478 94312527 ~ 94312774 (-) True G206742

Expression Profile