RNA id: TU230224


Basic Information

Item Value
RNA id TU230224
length 2016
RNA type TUCP
GC content 0.40
exon number 3
gene id G203414
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 91622001 ~ 91624293 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGAAAATGTTGTGCATGTCCATTACCTGAAatcaaaatcaatttaaattacaggttgtaatgcaacaaaataggaaaaatgcacctgtagctagctagctagtagtagTAGCGTATTGCTTCTACTGCTGCTTttcctgctgctactactactgcttatgctactgcttctactactgctgctgctactactacttctgctgctactactactgctgctactattagtgttactgctattactactgctgctgctactgctacttctgctgctgctgctaatactactgctacccTTATGAAAAAAGATTgctgtcagagtgcagtataactgcagtacactctAGTATAACTGTAATTagaatgcagtataactgcaggaGGCTGCAAATACTGCGTCCTAAAtaactgcagttactgcacttttactgctgTTTCAAAATTGCTATCTTTTTTTGTAAGGatactacaactgctactgctTCTACTTCTGCTTATGCTGCTACTGCTGACTACACTACAGTGTCTGTGTGAAACTGTGAAAGACATTTACATAAAGTCACTCACTGTCTTTtccaaaataaatattttcaaaGATTTGTATCCATTAGCATTTTAGAAGCAGTCACTGAAATGGAATGTTAGCATACTAGGAGTCATGGATGACAGAGTCCATTTAAAGTGTGCTCTCGTGAGAATTTGTAAAGTTATGATGTGCAGTAGGCTATTTAGCCTGCTTTCTATAACTTAACCTCATGCTTTACAATGGCCATGGCTTGGATCGTCTGTCTCGTTGGTTTGTCTTCTTCTTTTTTCCCCAGATGACTTTCAatacaggaagagtagctgctgctttcgcaacaaCTAATGGGTATCCAAACATAATAccccaaaaaacaaacaaataaatacacTGTGGCAAGATAAGAAACACTGTTTTCCTGATCCCTCCTATACTGTATCTGAATCCAAGGCCATCCATGTGATTTGCTGTGCGAAGCCGAAGATTACATTTCAGCCCCAGGCTTTGGAGTGGCCAGCCACATGTCTTGGGAGAATGAAAATTGACTTAGTGGGGAATGGTCTAACAAGTACTCCAGACCGGTTTTCATTGTAATCCTTTTGAATGGCGGTAAGAGGTCAGAAACCGTAGAGCACATGAAAAGAGGGGAGTATCAGCTTAAGGCTACACGCAGCAGGCATGTGGATCCAACACAAACCCAAACCTCTCACACACTGAATGTAACTAGAGTGAATATCCTATTGATTTTCACAGTTGTTTCTAATGCACATTTGTTTCTAATGgtttttaaaacaaaacaaaatttgtttgtttttatttaccAGACATATCGAGCATTAAAACACCTACACGTTGCAACTAGCTCCTTTTTTTCAGGGGTTTTGTGCTGTCCACTTTATGATAGAAGTAATAAAAACACTACTCTGTGTGTGCTTTACCCCTCTCTGAATTCTTCAATCAAAGTCAATCAACGAGAGGGATCATCAGGTTCAGGATTAAACATCTGTACTGAACACCACTTAGAAAACCATCTTCCCACTAAAATGTCCTTTCATGCATGAACCAAACATTGCTTTGCACTTACCTAACATAGAACATGATTTCCCACCCACATTAGATGACTGCCAGATCCCTTTTTAAATTGCTTATGCGCCCCAAGCAAAGTTTGTTTGTTGACAGCTACAACAGCTACCACTGTAATGTGAAAGCCTGATGCAATGTGTCTTTATAACGCACGACTGGCATGCTAAAGTGGTATCCAGGAGCTTATTACTTCCATCTTATTAGTGAACCCAGAAAGCGCATGTAGTTCCTTTAGACCGGGTAAATTCATCTCAAGCAGTGGGATTAGTTAGCTCAGTGTTAAGGTGGTGACAAAACTGTTTTGTTCACTTACTATATTtacctccttcttcctctcttttaGAATTGAGGAAGTCTAAGCCAAGAAGCGTAAAATAGAAATTGAAATTGTGCTGTGGAACATGAGCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230079 lncRNA upstream 208453 91412013 ~ 91413548 (+) True G203281
TU230047 lncRNA upstream 252998 91368559 ~ 91369003 (+) True G203251
TU229990 lncRNA upstream 342042 91279751 ~ 91279959 (+) True G203197
TU229609 lncRNA upstream 367212 91252360 ~ 91254789 (+) True G202844
TU229613 lncRNA upstream 383154 91238517 ~ 91238847 (+) True LOC110499641
TU230313 lncRNA downstream 144467 91768760 ~ 91769152 (+) True G203503
TU230361 lncRNA downstream 198026 91822319 ~ 91823796 (+) True G203547
TU230385 lncRNA downstream 228920 91853213 ~ 91853577 (+) True G203559
TU230406 lncRNA downstream 237100 91861393 ~ 91861963 (+) True G203579
TU230387 lncRNA downstream 294577 91918870 ~ 91919819 (+) True G203561
XM_036958969.1 mRNA upstream 30871 91582584 ~ 91591130 (+) True rassf9
XM_021576735.2 mRNA upstream 78236 91366282 ~ 91543765 (+) False mgat4c
XM_021576736.2 mRNA upstream 78236 91382025 ~ 91543765 (+) False mgat4c
XM_021576732.2 mRNA upstream 382264 91235465 ~ 91239737 (+) False LOC110499641
XM_036958919.1 mRNA upstream 408732 91157461 ~ 91213269 (+) False cep290
XM_021576786.2 mRNA downstream 130666 91754959 ~ 91779981 (+) True slc6a15
XM_036959018.1 mRNA downstream 212521 91836814 ~ 91852352 (+) False LOC110499735
XM_021576804.2 mRNA downstream 212988 91837281 ~ 91852059 (+) False LOC110499735
XM_021576812.2 mRNA downstream 213670 91837963 ~ 91852059 (+) False LOC110499735
XM_021576818.2 mRNA downstream 213919 91838212 ~ 91852059 (+) False LOC110499735
TU230045 other upstream 82628 91366337 ~ 91539373 (+) True mgat4c
TU229614 other upstream 384010 91237025 ~ 91237991 (+) False LOC110499641
TU228879 other upstream 904580 90716942 ~ 90717421 (+) True G202185
TU228729 other upstream 1174428 90447118 ~ 90447573 (+) True G202039
TU227536 other upstream 2199563 89419769 ~ 89422438 (+) True LOC110499234
TU230248 other downstream 44543 91668836 ~ 91671899 (+) True G203438
TU230367 other downstream 202556 91826849 ~ 91847400 (+) True G203551
TU230483 other downstream 397462 92021755 ~ 92024742 (+) True G203646
TU231132 other downstream 532982 92157275 ~ 92159903 (+) True G204240
TU231530 other downstream 1057053 92681346 ~ 92682355 (+) False G204593

Expression Profile