RNA id: TU230980


Basic Information

Item Value
RNA id TU230980
length 2939
lncRNA type antisense_over
GC content 0.48
exon number 3
gene id G204096
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 91901957 ~ 91905169 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTTGCAGGACTCTGGGCAGATTCGTCACTGCTGCTGTCATCCCCGTTCTCTGTGAAATTCAAGGACCAAAAACATCAGTTGTACTGCATGTCAGAACCAAACAACATCCATAGACAAGTATTATTCTTTGTGTGTTATGACTAAATAACAACAAACTTAAGTTGGTTTACTTTTGAAGTTCTGTCTAGTAGTCCAAATACCTGCCCATTGTCCAACCAAACATGGAACAAGGGGAAAACCTTTTATTGAACCAAAGGTTATGCTAGTACTGTGTTGGCTACAAACAGATGTTAACAAGATGTGGTTTAGATTATTGAACAAGGTAGATGTGATGATAATGGACAAGGAGAAGAAGCACATGATGTCAGCGCAGCGCCATGCCGTTTTATACAGGTTGCTTGAAAAGTCCTAAAAAGAACTGGTCCTTGTCCAGTCTCTGAGATGGAAGCATTGACAGGGCTCAGGGGTTGAAAGGGTGAGAGGGTAAAGAGAGGTCAGGTGTCAGGGGCTATGAGAGGTCAACAAGGTTAGAATCATTAGTCTGACTGTCAGTATGGTTTGCCTACAGGGTCCAACTGAGACAAACTTCCTGGTTCTACCTGTGAAGGGCGGGGTCCTCTAAAGATACAGGTACAGTAGTTATATTAGCAGGTGCTACACTATTAGGCATGGTGGCTGTAACACACTGGGAGAGGGGTTCTTTCACAttgggaagaggagaaggagggtcaGCTGACAGATGGAGGGAGGCCTGAAGACATTACACCTCATGCACCTGCTCATGTTATGTTGCTGAGTTAGTTTCCAGGAGGGGGACCCATGCATtcatataaacatatatatatatatagagagagagagagagagagagagagagagagtctggtgTCTGTTACTTACCCAATGGCATGTTACCTAGCTCTGTATACATTAAGGCACCATGGGCAGGGGAACAGAAAAAAGGCAACACACAAATCAAAAACACATTCATTCATTCCCCCATAATCAAAAACACATTCATTCATTCCCCCATAAATCAAAAACACATTCATTCATTCCCCATAAATCAAAACACATTCATTCCCCCATAATCAAAACACATTCATTCCTCCATAATCAAAACACATTCATTCCTCCATAATCAAAACACATTCATTCCCCCATAAATCAAAACACATTCATTCCCCCATAAATCAAAACACATTCATTCCTCCATAATCAAAACACATTCATTCCTCCATAAATCAAAACACATTCATTCCTCCATAATCAAAACACATTCATTCCCCCATAAATCAAAACACATTCATTCCCCCATAAATCAAAACACATTCATTCCTCCATAATCAAAACACATTCATTCCCCCATAAATCAAAACACATTCATTCCCCCATAAATCAAAACACATTCATTCCCCCATAAATCAAAACACATTCATTCCTCCATAATCAAAACACATTAATTCCCCCATAAATCAAAACACATTCATTCCTCCATAATCAAAACACATTCATTCCCCCATAAATCAAAACACATTCATTCCCCCATAAATCAAAACACATTCATTCCCCCATAAATCAAAACACATTCATTCCTCCATAATCAAAACACATTAATTCCCCCATAAATCAAAACACATTCATTCCTCCATAATCAAAACACATTCATTCCCCCATAAATCAAAACACATTCATTCCCCCATAAATCAAAACACATTCATTCCCCCATAAATCAAAACACATTCATTCCTCCATAATCAAAACACATTCATTCCCCCATAATCAAAACACATTCATTCCTCCATAATCAAAACACATTCATTCCTCCATAATCAAAACACATTCATTCCTCCATAATCAAAACACATTCATTCCCCCATAAATCAAAACACATTCATTCCCCCATAATCAAAACACATTCATTCCTCCATAATCAAAACACATTCATTCATAATGAAAAACAAAAGAAAAGACAGCATATGAGTGCTCGGTCTACTATTCAACAGTCAGGGCATCCTCCTCAACAGATACTGGTTCAATGGAACCATAACAAAATGTCAACCCCATAACAAAAAACCTCTCTCTAACCATACAAACCATGAAACAAAAAAGGTCAAAAACAGATGGGTTTTCAAACTTGATAAATAATGGAACACAAAAACGACAGAGCCAGAGAGGCTTGCTTAGTCCAACTGACTTTTGTGTGATTGCAACAATTTGTTGGGGTGACTTTTAAAAGCAGCATCTATTCAGGAGGAGGCAATGAGCAACATCAACTGAAACAGGCCCAAATCATCATGCAGTACACCATAGCCACCCATCCCTGGTTCTGGAGGCCATCCCAACAAATCAGTGTGCTGACAAGGTGAACACAAACACGCAGGTACATTTCAATGCCTTTGCTTAGATACCTTGGCTAAGTTATTGCTTCAATCCTACATAATTATGAGGTGAGCCAGACCTGTTAGCGCTGTGGGCTTGACCTCATGGACTGCCAGTGGCAAAGGCTGAGTAGGTCAGGGGTCAAGGCCTTGGACTGAACTACAGGATGTAGGACCGTAATCTGAGCCAGTTCgcaacagcaggaaaataatccccaAATTATTAAtgtttcattagggcaaatcaagtctgacattttaaagtggaaactacaaactttagaagcctttttaaatcttgaatacactacaagctTTAAATTTCCTGTTGATCTTACGTCTGTATACATCTGGCAGTGTGTGGCTGGCAGGTTGTGGCTAGTGCGGTTACCTTGCAGAGCGTTCCCCAGCAGGGCGTCCAGTTCGGGGTTAAACTCTGCCTTCTCCTTCAGCATGTGGAACAGCAGCTGGTTCTGAGTGGCGCTGGTGATCTCAGTCTGCTTCAGCCTGCCCTCCATCACCTTCACCTGGGACTCCCTCTGAGCCGCCTGCAGACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230926 lncRNA downstream 48360 91853295 ~ 91853597 (-) True G204052
TU230924 lncRNA downstream 49939 91851317 ~ 91852018 (-) True G204050
TU230889 lncRNA downstream 100717 91759738 ~ 91801240 (-) True G204018
TU230843 lncRNA downstream 128829 91771302 ~ 91773128 (-) True G203975
TU230680 lncRNA downstream 401400 91464310 ~ 91500557 (-) True G203829
TU230967 lncRNA upstream 27976 91933145 ~ 91935174 (-) True G204088
TU231050 lncRNA upstream 146724 92051893 ~ 92052201 (-) True G204165
TU231051 lncRNA upstream 148110 92053279 ~ 92053486 (-) True G204166
TU231056 lncRNA upstream 154447 92059616 ~ 92059971 (-) True G204171
TU231072 lncRNA upstream 181146 92086315 ~ 92086523 (-) True G204187
XM_036958992.1 mRNA downstream 64777 91780201 ~ 91837180 (-) False lrrk2
XM_036958987.1 mRNA downstream 64930 91780201 ~ 91837027 (-) False lrrk2
XR_005038802.1 mRNA downstream 64930 91782177 ~ 91837027 (-) True lrrk2
XM_021580318.2 mRNA downstream 161128 91691853 ~ 91740829 (-) True lrriq1
XM_021576768.2 mRNA downstream 228227 91668397 ~ 91673730 (-) True alx1
XM_021576828.2 mRNA upstream 116586 92021755 ~ 92027773 (-) True LOC110499762
XM_036959104.1 mRNA upstream 248215 92153384 ~ 92190013 (-) False LOC110499841
XM_021576906.2 mRNA upstream 248215 92153384 ~ 92190372 (-) False LOC110499841
XM_036959106.1 mRNA upstream 248215 92153384 ~ 92190372 (-) True LOC110499841
XM_036934765.1 mRNA upstream 292167 92197336 ~ 92202031 (-) True LOC110533906
TU230896 other downstream 113854 91787187 ~ 91788103 (-) True G204024
TU230773 other downstream 310908 91589212 ~ 91591049 (-) True G203915
TU228979 other downstream 1460532 90377557 ~ 90441425 (-) True G202279
TU228163 other downstream 2292067 89606837 ~ 89609890 (-) True LOC110499346
TU225173 other downstream 4575488 87322139 ~ 87326469 (-) True G198912
TU231426 other upstream 492891 92398060 ~ 92439601 (-) False LOC110499897
TU232213 other upstream 1056875 92962044 ~ 92962934 (-) True G205192
TU234006 other upstream 2407255 94312424 ~ 94312774 (-) False G206742
TU234005 other upstream 2407358 94312527 ~ 94312774 (-) True G206742
TU234008 other upstream 2408221 94313390 ~ 94313918 (-) True G206744

Expression Profile