RNA id: TU230967


Basic Information

Item Value
RNA id TU230967
length 2008
lncRNA type antisense_over
GC content 0.52
exon number 2
gene id G204088
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 91933145 ~ 91935174 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGTTTTTGAAGGATGACATTTATTTCACCAGGCATCTGACATCAGAACTGCTACAGTACAGAGTCAGACATTTTGGGGAGGGCCATCTACAGTTAAACCCCAGAGGGGAACCCAGGATTGGTTTTAATACATACAGTTTAACAGAACAAGAGAATCAGGGCTGCATctgaaattgcaccctattccctatataatgcactagcttttgaccagggtccatagtgctatgtacaaaagtagtgcactatataggcaatagggtgcaatTTCAGACTCAGACCAGGAAACATAACAGGCTGACacagggtcagggagagaggCTCTGTTCAAAAGCATTAAGAGTGCTGTTAGAACACCGTCTCCGAACTATGGTCCTCAGTTTCCCTTGTGGAGCGAGTTTTGGTGATCAACAATGCTAACCTTCAGTTGATTTCATCATACAATACTGTTAACATATAGATCATGTGTTGCTGGCTGCTGCTACTTGTCCTTTAACATTCAATAGTCCCAGCAGACAGCAGATACAATTAATTATTTGACAGTTAGTTCAGCTTACACCatagttggggtcaattccatttcaaatcTAGTAAATTTAGGAAGTACACAAAAATTCCATCTCTAATTTGtgttactttctgaattgactggaattgaaatggtattgaccccagccctggctCACAGCAATCACAGATATGGCTGTTGTAATGTGCAGTAAAACTGGCACACAGGATACAACCACCACACACGGGGGACTTCCAGGACCAGGATAGGAGGCTTACAGTACAGGCACAGGTAAacggctcctctcctcctcacactttacattattatatacagtacgTAACTATGGTTACCATATGGACCTCACCTGAGGTCCAGAACAGAAGACCTCTATGGGTCAAAGGTGAGCAAACAACTTAGCAGCACAGGCGTTAGGTTAGTTCACAACTTTTAGAGGGAGGGTGTGGCAACAGCATTAAGAGGAGAATCGTACATTACTACATAGATATAAATTATGAGCAGTGGACGAGTGAGTGAAGACAGTCGGTGTATCCTCAAAGAGACATTGTATTTGCACATAGAGTCAGTAAGGATTACGTGTAAAGACGAAGATAGCAGACAGaaggtgactgactgactgaaggccTTTTCCAAGTGGTTACAAGACTATTGTTAGTTAGTGTATCCAGTTGACAGGTTGACAAGTGCAAGACAAGTTTCACAATTTGGTCAGCTACAATAAGTGGGAGCTGAATTCGAAGCAAAATAACATTTAAACCAAGCTGTGATTTAAGGGGTGCGGTGATTTGTCAGTTGACATAAAGCCACATTGATATCAGATAAGGAGGGACAGTGGTTCTGCTTACAGTGCTTCTGTTCCTTTGCTGTGCAACTGGAGAACCTGGTCCAGGTCTTGTAGGCCAGCTACAGAGCCCAGTGGCCAGCTACAGAGCCCAGTGGCCCACCcatcctcttttcctcctctccgcACCACGCATTAACTCCCCCAGCCCAGAAAGACCCTAAAAATCTGCctctatatgtatgtatgtgtgtatgtgtgtgtgtctaaatatGACCCTTGTGGGCTTACTATATACTTAATATGAGCTGAGAGGGAAAGATGTCTACCAAGCTAACAGAGAATTTATTCTGCACAAGTCAGTGCAACTGCCAGGCAGGTTAGACTAGATAAATTTCCCTAAGGATACATCTATCTCACTCTGGAGAAAGACTACAGCTAATTATGCTGAGATAAGATTCCATTCCTGCGAGCTTGCACAGTTTTCATGGTTACAATATGtaggggctgggggttccatggTTTCCAAGGTGAAAGCTCAGAGGTAAAAGTGCTAGTCAGCAGCGTCCAAGGTTAAGGGTCACGACGGGAGGTCACAGCCATGTTCAGTTATTGGCCACCTCGTCAGTGGTGTCCGCCGTTGTCTCTAAGGTGCTGTCGAGTCCGCCCCGGGCACGCCAGATCTTCACTGTTCGATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230979 lncRNA downstream 27976 91901957 ~ 91905169 (-) False G204096
TU230980 lncRNA downstream 27976 91901957 ~ 91905169 (-) True G204096
TU230926 lncRNA downstream 79548 91853295 ~ 91853597 (-) True G204052
TU230924 lncRNA downstream 81127 91851317 ~ 91852018 (-) True G204050
TU230889 lncRNA downstream 131905 91759738 ~ 91801240 (-) True G204018
TU231050 lncRNA upstream 116719 92051893 ~ 92052201 (-) True G204165
TU231051 lncRNA upstream 118105 92053279 ~ 92053486 (-) True G204166
TU231056 lncRNA upstream 124442 92059616 ~ 92059971 (-) True G204171
TU231072 lncRNA upstream 151141 92086315 ~ 92086523 (-) True G204187
TU231082 lncRNA upstream 164216 92099390 ~ 92099781 (-) True G204196
XM_036958992.1 mRNA downstream 95965 91780201 ~ 91837180 (-) False lrrk2
XM_036958987.1 mRNA downstream 96118 91780201 ~ 91837027 (-) False lrrk2
XR_005038802.1 mRNA downstream 96118 91782177 ~ 91837027 (-) True lrrk2
XM_021580318.2 mRNA downstream 192316 91691853 ~ 91740829 (-) True lrriq1
XM_021576768.2 mRNA downstream 259415 91668397 ~ 91673730 (-) True alx1
XM_021576828.2 mRNA upstream 86581 92021755 ~ 92027773 (-) True LOC110499762
XM_036959104.1 mRNA upstream 218210 92153384 ~ 92190013 (-) False LOC110499841
XM_021576906.2 mRNA upstream 218210 92153384 ~ 92190372 (-) False LOC110499841
XM_036959106.1 mRNA upstream 218210 92153384 ~ 92190372 (-) True LOC110499841
XM_036934765.1 mRNA upstream 262162 92197336 ~ 92202031 (-) True LOC110533906
TU230896 other downstream 145042 91787187 ~ 91788103 (-) True G204024
TU230773 other downstream 342096 91589212 ~ 91591049 (-) True G203915
TU228979 other downstream 1491720 90377557 ~ 90441425 (-) True G202279
TU228163 other downstream 2323255 89606837 ~ 89609890 (-) True LOC110499346
TU225173 other downstream 4606676 87322139 ~ 87326469 (-) True G198912
TU231426 other upstream 462886 92398060 ~ 92439601 (-) False LOC110499897
TU232213 other upstream 1026870 92962044 ~ 92962934 (-) True G205192
TU234006 other upstream 2377250 94312424 ~ 94312774 (-) False G206742
TU234005 other upstream 2377353 94312527 ~ 94312774 (-) True G206742
TU234008 other upstream 2378216 94313390 ~ 94313918 (-) True G206744

Expression Profile